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Literature-Based Discovery to Elucidate the Biological Links between Resistant Hypertension and COVID-19

SIMPLE SUMMARY: Given the prevalence of COVID-19 infection, assessment of sequelae is critical to public health. Recent studies revealed a higher incidence of resistant hypertension after COVID-19 recovery. Presently, there is limited data and ability to clinically ascribe mechanisms using tradition...

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Autores principales: Kartchner, David, McCoy, Kevin, Dubey, Janhvi, Zhang, Dongyu, Zheng, Kevin, Umrani, Rushda, Kim, James J., Mitchell, Cassie S.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: MDPI 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10526006/
https://www.ncbi.nlm.nih.gov/pubmed/37759668
http://dx.doi.org/10.3390/biology12091269
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author Kartchner, David
McCoy, Kevin
Dubey, Janhvi
Zhang, Dongyu
Zheng, Kevin
Umrani, Rushda
Kim, James J.
Mitchell, Cassie S.
author_facet Kartchner, David
McCoy, Kevin
Dubey, Janhvi
Zhang, Dongyu
Zheng, Kevin
Umrani, Rushda
Kim, James J.
Mitchell, Cassie S.
author_sort Kartchner, David
collection PubMed
description SIMPLE SUMMARY: Given the prevalence of COVID-19 infection, assessment of sequelae is critical to public health. Recent studies revealed a higher incidence of resistant hypertension after COVID-19 recovery. Presently, there is limited data and ability to clinically ascribe mechanisms using traditional techniques. Literature-based discovery (LBD) leverages artificial intelligence to stitch together multi-scalar relationships from millions of journal articles. Identified related concepts are ranked according to their predicted relevance in ascribing the shared etiology of hypertension and COVID-19. The dominant LBD-identified ascribed physiology included: altered endocrine function, inflammation, lipid dysfunction, altered nerve input for blood pressure, and altered COVID-19 viral entry. ABSTRACT: Multiple studies have reported new or exacerbated persistent or resistant hypertension in patients previously infected with COVID-19. We used literature-based discovery to identify and prioritize multi-scalar explanatory biology that relates resistant hypertension to COVID-19. Cross-domain text mining of 33+ million PubMed articles within a comprehensive knowledge graph was performed using SemNet 2.0. Unsupervised rank aggregation determined which concepts were most relevant utilizing the normalized HeteSim score. A series of simulations identified concepts directly related to COVID-19 and resistant hypertension or connected via one of three renin–angiotensin–aldosterone system hub nodes (mineralocorticoid receptor, epithelial sodium channel, angiotensin I receptor). The top-ranking concepts relating COVID-19 to resistant hypertension included: cGMP-dependent protein kinase II, MAP3K1, haspin, ral guanine nucleotide exchange factor, N-(3-Oxododecanoyl)-L-homoserine lactone, aspartic endopeptidases, metabotropic glutamate receptors, choline-phosphate cytidylyltransferase, protein tyrosine phosphatase, tat genes, MAP3K10, uridine kinase, dicer enzyme, CMD1B, USP17L2, FLNA, exportin 5, somatotropin releasing hormone, beta-melanocyte stimulating hormone, pegylated leptin, beta-lipoprotein, corticotropin, growth hormone-releasing peptide 2, pro-opiomelanocortin, alpha-melanocyte stimulating hormone, prolactin, thyroid hormone, poly-beta-hydroxybutyrate depolymerase, CR 1392, BCR-ABL fusion gene, high density lipoprotein sphingomyelin, pregnancy-associated murine protein 1, recQ4 helicase, immunoglobulin heavy chain variable domain, aglycotransferrin, host cell factor C1, ATP6V0D1, imipramine demethylase, TRIM40, H3C2 gene, COL1A1+COL1A2 gene, QARS gene, VPS54, TPM2, MPST, EXOSC2, ribosomal protein S10, TAP-144, gonadotropins, human gonadotropin releasing hormone 1, beta-lipotropin, octreotide, salmon calcitonin, des-n-octanoyl ghrelin, liraglutide, gastrins. Concepts were mapped to six physiological themes: altered endocrine function, 23.1%; inflammation or cytokine storm, 21.3%; lipid metabolism and atherosclerosis, 17.6%; sympathetic input to blood pressure regulation, 16.7%; altered entry of COVID-19 virus, 14.8%; and unknown, 6.5%.
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spelling pubmed-105260062023-09-28 Literature-Based Discovery to Elucidate the Biological Links between Resistant Hypertension and COVID-19 Kartchner, David McCoy, Kevin Dubey, Janhvi Zhang, Dongyu Zheng, Kevin Umrani, Rushda Kim, James J. Mitchell, Cassie S. Biology (Basel) Article SIMPLE SUMMARY: Given the prevalence of COVID-19 infection, assessment of sequelae is critical to public health. Recent studies revealed a higher incidence of resistant hypertension after COVID-19 recovery. Presently, there is limited data and ability to clinically ascribe mechanisms using traditional techniques. Literature-based discovery (LBD) leverages artificial intelligence to stitch together multi-scalar relationships from millions of journal articles. Identified related concepts are ranked according to their predicted relevance in ascribing the shared etiology of hypertension and COVID-19. The dominant LBD-identified ascribed physiology included: altered endocrine function, inflammation, lipid dysfunction, altered nerve input for blood pressure, and altered COVID-19 viral entry. ABSTRACT: Multiple studies have reported new or exacerbated persistent or resistant hypertension in patients previously infected with COVID-19. We used literature-based discovery to identify and prioritize multi-scalar explanatory biology that relates resistant hypertension to COVID-19. Cross-domain text mining of 33+ million PubMed articles within a comprehensive knowledge graph was performed using SemNet 2.0. Unsupervised rank aggregation determined which concepts were most relevant utilizing the normalized HeteSim score. A series of simulations identified concepts directly related to COVID-19 and resistant hypertension or connected via one of three renin–angiotensin–aldosterone system hub nodes (mineralocorticoid receptor, epithelial sodium channel, angiotensin I receptor). The top-ranking concepts relating COVID-19 to resistant hypertension included: cGMP-dependent protein kinase II, MAP3K1, haspin, ral guanine nucleotide exchange factor, N-(3-Oxododecanoyl)-L-homoserine lactone, aspartic endopeptidases, metabotropic glutamate receptors, choline-phosphate cytidylyltransferase, protein tyrosine phosphatase, tat genes, MAP3K10, uridine kinase, dicer enzyme, CMD1B, USP17L2, FLNA, exportin 5, somatotropin releasing hormone, beta-melanocyte stimulating hormone, pegylated leptin, beta-lipoprotein, corticotropin, growth hormone-releasing peptide 2, pro-opiomelanocortin, alpha-melanocyte stimulating hormone, prolactin, thyroid hormone, poly-beta-hydroxybutyrate depolymerase, CR 1392, BCR-ABL fusion gene, high density lipoprotein sphingomyelin, pregnancy-associated murine protein 1, recQ4 helicase, immunoglobulin heavy chain variable domain, aglycotransferrin, host cell factor C1, ATP6V0D1, imipramine demethylase, TRIM40, H3C2 gene, COL1A1+COL1A2 gene, QARS gene, VPS54, TPM2, MPST, EXOSC2, ribosomal protein S10, TAP-144, gonadotropins, human gonadotropin releasing hormone 1, beta-lipotropin, octreotide, salmon calcitonin, des-n-octanoyl ghrelin, liraglutide, gastrins. Concepts were mapped to six physiological themes: altered endocrine function, 23.1%; inflammation or cytokine storm, 21.3%; lipid metabolism and atherosclerosis, 17.6%; sympathetic input to blood pressure regulation, 16.7%; altered entry of COVID-19 virus, 14.8%; and unknown, 6.5%. MDPI 2023-09-21 /pmc/articles/PMC10526006/ /pubmed/37759668 http://dx.doi.org/10.3390/biology12091269 Text en © 2023 by the authors. https://creativecommons.org/licenses/by/4.0/Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (https://creativecommons.org/licenses/by/4.0/).
spellingShingle Article
Kartchner, David
McCoy, Kevin
Dubey, Janhvi
Zhang, Dongyu
Zheng, Kevin
Umrani, Rushda
Kim, James J.
Mitchell, Cassie S.
Literature-Based Discovery to Elucidate the Biological Links between Resistant Hypertension and COVID-19
title Literature-Based Discovery to Elucidate the Biological Links between Resistant Hypertension and COVID-19
title_full Literature-Based Discovery to Elucidate the Biological Links between Resistant Hypertension and COVID-19
title_fullStr Literature-Based Discovery to Elucidate the Biological Links between Resistant Hypertension and COVID-19
title_full_unstemmed Literature-Based Discovery to Elucidate the Biological Links between Resistant Hypertension and COVID-19
title_short Literature-Based Discovery to Elucidate the Biological Links between Resistant Hypertension and COVID-19
title_sort literature-based discovery to elucidate the biological links between resistant hypertension and covid-19
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10526006/
https://www.ncbi.nlm.nih.gov/pubmed/37759668
http://dx.doi.org/10.3390/biology12091269
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