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Literature-Based Discovery to Elucidate the Biological Links between Resistant Hypertension and COVID-19
SIMPLE SUMMARY: Given the prevalence of COVID-19 infection, assessment of sequelae is critical to public health. Recent studies revealed a higher incidence of resistant hypertension after COVID-19 recovery. Presently, there is limited data and ability to clinically ascribe mechanisms using tradition...
Autores principales: | , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
MDPI
2023
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10526006/ https://www.ncbi.nlm.nih.gov/pubmed/37759668 http://dx.doi.org/10.3390/biology12091269 |
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author | Kartchner, David McCoy, Kevin Dubey, Janhvi Zhang, Dongyu Zheng, Kevin Umrani, Rushda Kim, James J. Mitchell, Cassie S. |
author_facet | Kartchner, David McCoy, Kevin Dubey, Janhvi Zhang, Dongyu Zheng, Kevin Umrani, Rushda Kim, James J. Mitchell, Cassie S. |
author_sort | Kartchner, David |
collection | PubMed |
description | SIMPLE SUMMARY: Given the prevalence of COVID-19 infection, assessment of sequelae is critical to public health. Recent studies revealed a higher incidence of resistant hypertension after COVID-19 recovery. Presently, there is limited data and ability to clinically ascribe mechanisms using traditional techniques. Literature-based discovery (LBD) leverages artificial intelligence to stitch together multi-scalar relationships from millions of journal articles. Identified related concepts are ranked according to their predicted relevance in ascribing the shared etiology of hypertension and COVID-19. The dominant LBD-identified ascribed physiology included: altered endocrine function, inflammation, lipid dysfunction, altered nerve input for blood pressure, and altered COVID-19 viral entry. ABSTRACT: Multiple studies have reported new or exacerbated persistent or resistant hypertension in patients previously infected with COVID-19. We used literature-based discovery to identify and prioritize multi-scalar explanatory biology that relates resistant hypertension to COVID-19. Cross-domain text mining of 33+ million PubMed articles within a comprehensive knowledge graph was performed using SemNet 2.0. Unsupervised rank aggregation determined which concepts were most relevant utilizing the normalized HeteSim score. A series of simulations identified concepts directly related to COVID-19 and resistant hypertension or connected via one of three renin–angiotensin–aldosterone system hub nodes (mineralocorticoid receptor, epithelial sodium channel, angiotensin I receptor). The top-ranking concepts relating COVID-19 to resistant hypertension included: cGMP-dependent protein kinase II, MAP3K1, haspin, ral guanine nucleotide exchange factor, N-(3-Oxododecanoyl)-L-homoserine lactone, aspartic endopeptidases, metabotropic glutamate receptors, choline-phosphate cytidylyltransferase, protein tyrosine phosphatase, tat genes, MAP3K10, uridine kinase, dicer enzyme, CMD1B, USP17L2, FLNA, exportin 5, somatotropin releasing hormone, beta-melanocyte stimulating hormone, pegylated leptin, beta-lipoprotein, corticotropin, growth hormone-releasing peptide 2, pro-opiomelanocortin, alpha-melanocyte stimulating hormone, prolactin, thyroid hormone, poly-beta-hydroxybutyrate depolymerase, CR 1392, BCR-ABL fusion gene, high density lipoprotein sphingomyelin, pregnancy-associated murine protein 1, recQ4 helicase, immunoglobulin heavy chain variable domain, aglycotransferrin, host cell factor C1, ATP6V0D1, imipramine demethylase, TRIM40, H3C2 gene, COL1A1+COL1A2 gene, QARS gene, VPS54, TPM2, MPST, EXOSC2, ribosomal protein S10, TAP-144, gonadotropins, human gonadotropin releasing hormone 1, beta-lipotropin, octreotide, salmon calcitonin, des-n-octanoyl ghrelin, liraglutide, gastrins. Concepts were mapped to six physiological themes: altered endocrine function, 23.1%; inflammation or cytokine storm, 21.3%; lipid metabolism and atherosclerosis, 17.6%; sympathetic input to blood pressure regulation, 16.7%; altered entry of COVID-19 virus, 14.8%; and unknown, 6.5%. |
format | Online Article Text |
id | pubmed-10526006 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2023 |
publisher | MDPI |
record_format | MEDLINE/PubMed |
spelling | pubmed-105260062023-09-28 Literature-Based Discovery to Elucidate the Biological Links between Resistant Hypertension and COVID-19 Kartchner, David McCoy, Kevin Dubey, Janhvi Zhang, Dongyu Zheng, Kevin Umrani, Rushda Kim, James J. Mitchell, Cassie S. Biology (Basel) Article SIMPLE SUMMARY: Given the prevalence of COVID-19 infection, assessment of sequelae is critical to public health. Recent studies revealed a higher incidence of resistant hypertension after COVID-19 recovery. Presently, there is limited data and ability to clinically ascribe mechanisms using traditional techniques. Literature-based discovery (LBD) leverages artificial intelligence to stitch together multi-scalar relationships from millions of journal articles. Identified related concepts are ranked according to their predicted relevance in ascribing the shared etiology of hypertension and COVID-19. The dominant LBD-identified ascribed physiology included: altered endocrine function, inflammation, lipid dysfunction, altered nerve input for blood pressure, and altered COVID-19 viral entry. ABSTRACT: Multiple studies have reported new or exacerbated persistent or resistant hypertension in patients previously infected with COVID-19. We used literature-based discovery to identify and prioritize multi-scalar explanatory biology that relates resistant hypertension to COVID-19. Cross-domain text mining of 33+ million PubMed articles within a comprehensive knowledge graph was performed using SemNet 2.0. Unsupervised rank aggregation determined which concepts were most relevant utilizing the normalized HeteSim score. A series of simulations identified concepts directly related to COVID-19 and resistant hypertension or connected via one of three renin–angiotensin–aldosterone system hub nodes (mineralocorticoid receptor, epithelial sodium channel, angiotensin I receptor). The top-ranking concepts relating COVID-19 to resistant hypertension included: cGMP-dependent protein kinase II, MAP3K1, haspin, ral guanine nucleotide exchange factor, N-(3-Oxododecanoyl)-L-homoserine lactone, aspartic endopeptidases, metabotropic glutamate receptors, choline-phosphate cytidylyltransferase, protein tyrosine phosphatase, tat genes, MAP3K10, uridine kinase, dicer enzyme, CMD1B, USP17L2, FLNA, exportin 5, somatotropin releasing hormone, beta-melanocyte stimulating hormone, pegylated leptin, beta-lipoprotein, corticotropin, growth hormone-releasing peptide 2, pro-opiomelanocortin, alpha-melanocyte stimulating hormone, prolactin, thyroid hormone, poly-beta-hydroxybutyrate depolymerase, CR 1392, BCR-ABL fusion gene, high density lipoprotein sphingomyelin, pregnancy-associated murine protein 1, recQ4 helicase, immunoglobulin heavy chain variable domain, aglycotransferrin, host cell factor C1, ATP6V0D1, imipramine demethylase, TRIM40, H3C2 gene, COL1A1+COL1A2 gene, QARS gene, VPS54, TPM2, MPST, EXOSC2, ribosomal protein S10, TAP-144, gonadotropins, human gonadotropin releasing hormone 1, beta-lipotropin, octreotide, salmon calcitonin, des-n-octanoyl ghrelin, liraglutide, gastrins. Concepts were mapped to six physiological themes: altered endocrine function, 23.1%; inflammation or cytokine storm, 21.3%; lipid metabolism and atherosclerosis, 17.6%; sympathetic input to blood pressure regulation, 16.7%; altered entry of COVID-19 virus, 14.8%; and unknown, 6.5%. MDPI 2023-09-21 /pmc/articles/PMC10526006/ /pubmed/37759668 http://dx.doi.org/10.3390/biology12091269 Text en © 2023 by the authors. https://creativecommons.org/licenses/by/4.0/Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (https://creativecommons.org/licenses/by/4.0/). |
spellingShingle | Article Kartchner, David McCoy, Kevin Dubey, Janhvi Zhang, Dongyu Zheng, Kevin Umrani, Rushda Kim, James J. Mitchell, Cassie S. Literature-Based Discovery to Elucidate the Biological Links between Resistant Hypertension and COVID-19 |
title | Literature-Based Discovery to Elucidate the Biological Links between Resistant Hypertension and COVID-19 |
title_full | Literature-Based Discovery to Elucidate the Biological Links between Resistant Hypertension and COVID-19 |
title_fullStr | Literature-Based Discovery to Elucidate the Biological Links between Resistant Hypertension and COVID-19 |
title_full_unstemmed | Literature-Based Discovery to Elucidate the Biological Links between Resistant Hypertension and COVID-19 |
title_short | Literature-Based Discovery to Elucidate the Biological Links between Resistant Hypertension and COVID-19 |
title_sort | literature-based discovery to elucidate the biological links between resistant hypertension and covid-19 |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10526006/ https://www.ncbi.nlm.nih.gov/pubmed/37759668 http://dx.doi.org/10.3390/biology12091269 |
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