Cargando…

Protein Identification and Quantification Using Porous Silicon Arrays, Optical Measurements, and Machine Learning

We report a versatile platform based on an array of porous silicon (PSi) thin films that can identify analytes based on their physical and chemical properties without the use of specific capture agents. The ability of this system to reproducibly classify, quantify, and discriminate three proteins se...

Descripción completa

Detalles Bibliográficos
Autores principales: Ward, Simon J., Cao, Tengfei, Zhou, Xiang, Chang, Catie, Weiss, Sharon M.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: MDPI 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10526835/
https://www.ncbi.nlm.nih.gov/pubmed/37754113
http://dx.doi.org/10.3390/bios13090879
_version_ 1785111078471991296
author Ward, Simon J.
Cao, Tengfei
Zhou, Xiang
Chang, Catie
Weiss, Sharon M.
author_facet Ward, Simon J.
Cao, Tengfei
Zhou, Xiang
Chang, Catie
Weiss, Sharon M.
author_sort Ward, Simon J.
collection PubMed
description We report a versatile platform based on an array of porous silicon (PSi) thin films that can identify analytes based on their physical and chemical properties without the use of specific capture agents. The ability of this system to reproducibly classify, quantify, and discriminate three proteins separately is demonstrated by probing the reflectance of PSi array elements with a unique combination of pore size and buffer pH, and by analyzing the optical signals using machine learning. Protein identification and discrimination are reported over a concentration range of two orders of magnitude. This work represents a significant first step towards a low-cost, simple, versatile, and robust sensor platform that is able to detect biomolecules without the added expense and limitations of using capture agents.
format Online
Article
Text
id pubmed-10526835
institution National Center for Biotechnology Information
language English
publishDate 2023
publisher MDPI
record_format MEDLINE/PubMed
spelling pubmed-105268352023-09-28 Protein Identification and Quantification Using Porous Silicon Arrays, Optical Measurements, and Machine Learning Ward, Simon J. Cao, Tengfei Zhou, Xiang Chang, Catie Weiss, Sharon M. Biosensors (Basel) Article We report a versatile platform based on an array of porous silicon (PSi) thin films that can identify analytes based on their physical and chemical properties without the use of specific capture agents. The ability of this system to reproducibly classify, quantify, and discriminate three proteins separately is demonstrated by probing the reflectance of PSi array elements with a unique combination of pore size and buffer pH, and by analyzing the optical signals using machine learning. Protein identification and discrimination are reported over a concentration range of two orders of magnitude. This work represents a significant first step towards a low-cost, simple, versatile, and robust sensor platform that is able to detect biomolecules without the added expense and limitations of using capture agents. MDPI 2023-09-09 /pmc/articles/PMC10526835/ /pubmed/37754113 http://dx.doi.org/10.3390/bios13090879 Text en © 2023 by the authors. https://creativecommons.org/licenses/by/4.0/Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (https://creativecommons.org/licenses/by/4.0/).
spellingShingle Article
Ward, Simon J.
Cao, Tengfei
Zhou, Xiang
Chang, Catie
Weiss, Sharon M.
Protein Identification and Quantification Using Porous Silicon Arrays, Optical Measurements, and Machine Learning
title Protein Identification and Quantification Using Porous Silicon Arrays, Optical Measurements, and Machine Learning
title_full Protein Identification and Quantification Using Porous Silicon Arrays, Optical Measurements, and Machine Learning
title_fullStr Protein Identification and Quantification Using Porous Silicon Arrays, Optical Measurements, and Machine Learning
title_full_unstemmed Protein Identification and Quantification Using Porous Silicon Arrays, Optical Measurements, and Machine Learning
title_short Protein Identification and Quantification Using Porous Silicon Arrays, Optical Measurements, and Machine Learning
title_sort protein identification and quantification using porous silicon arrays, optical measurements, and machine learning
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10526835/
https://www.ncbi.nlm.nih.gov/pubmed/37754113
http://dx.doi.org/10.3390/bios13090879
work_keys_str_mv AT wardsimonj proteinidentificationandquantificationusingporoussiliconarraysopticalmeasurementsandmachinelearning
AT caotengfei proteinidentificationandquantificationusingporoussiliconarraysopticalmeasurementsandmachinelearning
AT zhouxiang proteinidentificationandquantificationusingporoussiliconarraysopticalmeasurementsandmachinelearning
AT changcatie proteinidentificationandquantificationusingporoussiliconarraysopticalmeasurementsandmachinelearning
AT weisssharonm proteinidentificationandquantificationusingporoussiliconarraysopticalmeasurementsandmachinelearning