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DSMRI: Domain Shift Analyzer for Multi-Center MRI Datasets

In medical research and clinical applications, the utilization of MRI datasets from multiple centers has become increasingly prevalent. However, inherent variability between these centers presents challenges due to domain shift, which can impact the quality and reliability of the analysis. Regrettab...

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Autores principales: Kushol, Rafsanjany, Wilman, Alan H., Kalra, Sanjay, Yang, Yee-Hong
Formato: Online Artículo Texto
Lenguaje:English
Publicado: MDPI 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10527875/
https://www.ncbi.nlm.nih.gov/pubmed/37761314
http://dx.doi.org/10.3390/diagnostics13182947
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author Kushol, Rafsanjany
Wilman, Alan H.
Kalra, Sanjay
Yang, Yee-Hong
author_facet Kushol, Rafsanjany
Wilman, Alan H.
Kalra, Sanjay
Yang, Yee-Hong
author_sort Kushol, Rafsanjany
collection PubMed
description In medical research and clinical applications, the utilization of MRI datasets from multiple centers has become increasingly prevalent. However, inherent variability between these centers presents challenges due to domain shift, which can impact the quality and reliability of the analysis. Regrettably, the absence of adequate tools for domain shift analysis hinders the development and validation of domain adaptation and harmonization techniques. To address this issue, this paper presents a novel Domain Shift analyzer for MRI (DSMRI) framework designed explicitly for domain shift analysis in multi-center MRI datasets. The proposed model assesses the degree of domain shift within an MRI dataset by leveraging various MRI-quality-related metrics derived from the spatial domain. DSMRI also incorporates features from the frequency domain to capture low- and high-frequency information about the image. It further includes the wavelet domain features by effectively measuring the sparsity and energy present in the wavelet coefficients. Furthermore, DSMRI introduces several texture features, thereby enhancing the robustness of the domain shift analysis process. The proposed framework includes visualization techniques such as t-SNE and UMAP to demonstrate that similar data are grouped closely while dissimilar data are in separate clusters. Additionally, quantitative analysis is used to measure the domain shift distance, domain classification accuracy, and the ranking of significant features. The effectiveness of the proposed approach is demonstrated using experimental evaluations on seven large-scale multi-site neuroimaging datasets.
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spelling pubmed-105278752023-09-28 DSMRI: Domain Shift Analyzer for Multi-Center MRI Datasets Kushol, Rafsanjany Wilman, Alan H. Kalra, Sanjay Yang, Yee-Hong Diagnostics (Basel) Article In medical research and clinical applications, the utilization of MRI datasets from multiple centers has become increasingly prevalent. However, inherent variability between these centers presents challenges due to domain shift, which can impact the quality and reliability of the analysis. Regrettably, the absence of adequate tools for domain shift analysis hinders the development and validation of domain adaptation and harmonization techniques. To address this issue, this paper presents a novel Domain Shift analyzer for MRI (DSMRI) framework designed explicitly for domain shift analysis in multi-center MRI datasets. The proposed model assesses the degree of domain shift within an MRI dataset by leveraging various MRI-quality-related metrics derived from the spatial domain. DSMRI also incorporates features from the frequency domain to capture low- and high-frequency information about the image. It further includes the wavelet domain features by effectively measuring the sparsity and energy present in the wavelet coefficients. Furthermore, DSMRI introduces several texture features, thereby enhancing the robustness of the domain shift analysis process. The proposed framework includes visualization techniques such as t-SNE and UMAP to demonstrate that similar data are grouped closely while dissimilar data are in separate clusters. Additionally, quantitative analysis is used to measure the domain shift distance, domain classification accuracy, and the ranking of significant features. The effectiveness of the proposed approach is demonstrated using experimental evaluations on seven large-scale multi-site neuroimaging datasets. MDPI 2023-09-14 /pmc/articles/PMC10527875/ /pubmed/37761314 http://dx.doi.org/10.3390/diagnostics13182947 Text en © 2023 by the authors. https://creativecommons.org/licenses/by/4.0/Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (https://creativecommons.org/licenses/by/4.0/).
spellingShingle Article
Kushol, Rafsanjany
Wilman, Alan H.
Kalra, Sanjay
Yang, Yee-Hong
DSMRI: Domain Shift Analyzer for Multi-Center MRI Datasets
title DSMRI: Domain Shift Analyzer for Multi-Center MRI Datasets
title_full DSMRI: Domain Shift Analyzer for Multi-Center MRI Datasets
title_fullStr DSMRI: Domain Shift Analyzer for Multi-Center MRI Datasets
title_full_unstemmed DSMRI: Domain Shift Analyzer for Multi-Center MRI Datasets
title_short DSMRI: Domain Shift Analyzer for Multi-Center MRI Datasets
title_sort dsmri: domain shift analyzer for multi-center mri datasets
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10527875/
https://www.ncbi.nlm.nih.gov/pubmed/37761314
http://dx.doi.org/10.3390/diagnostics13182947
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