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The differentially expressed proteins related to clinical viral encephalitis revealed by proteomics

To screen out the prospective biomarkers of viral encephalitis (VE), analyze the biological process and signaling pathways involved by differentially expressed proteins (DEPs). A total of 11 cerebrospinal fluid (CSF) samples with VE and 5 with non‐nervous system infection were used to perform label‐...

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Autores principales: Wang, Qian, Yan, Shan‐Shan, Zhang, Jun‐Yan, Du, Ruo‐Lan, Xue, Lu‐Lu, Li, Juan, Yu, Chang‐Yin
Formato: Online Artículo Texto
Lenguaje:English
Publicado: John Wiley and Sons Inc. 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10528792/
https://www.ncbi.nlm.nih.gov/pubmed/37786892
http://dx.doi.org/10.1002/ibra.12036
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author Wang, Qian
Yan, Shan‐Shan
Zhang, Jun‐Yan
Du, Ruo‐Lan
Xue, Lu‐Lu
Li, Juan
Yu, Chang‐Yin
author_facet Wang, Qian
Yan, Shan‐Shan
Zhang, Jun‐Yan
Du, Ruo‐Lan
Xue, Lu‐Lu
Li, Juan
Yu, Chang‐Yin
author_sort Wang, Qian
collection PubMed
description To screen out the prospective biomarkers of viral encephalitis (VE), analyze the biological process and signaling pathways involved by differentially expressed proteins (DEPs). A total of 11 cerebrospinal fluid (CSF) samples with VE and 5 with non‐nervous system infection were used to perform label‐free proteomic techniques. Then, the bioinformatic analysis of DEPs was applied by Interproscan software. Moreover, 73 CSF samples in the VE group and 53 in the control group were used to verify the changes of some DEPs by enzyme‐linked immunosorbent assay (ELISA). Thirty‐nine DEPs were identified, including 18 upregulated DEPs and 21 downregulated DEPs. DEPs were mainly enriched in cell adhesion molecules by Kyoto Encyclopedia of Genes and Genomes analysis pathway analysis. The DEPs related to axon tissue were obviously downregulated and the most significant downregulated proteins were neurexin 3, neurofascin, and neuroligin 2 (NLGN2). Moreover, the protein expression of NLGN2 in the VE group was significantly higher than that in the control group by ELISA. The correlation analysis of NLGN2 in the VE group revealed that there was a weak positive correlation with CSF protein and a weak negative correlation with CSF chloride. The clinical VE may be closely related to NLGN2 and the cell adhesion molecule pathway.
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spelling pubmed-105287922023-10-02 The differentially expressed proteins related to clinical viral encephalitis revealed by proteomics Wang, Qian Yan, Shan‐Shan Zhang, Jun‐Yan Du, Ruo‐Lan Xue, Lu‐Lu Li, Juan Yu, Chang‐Yin Ibrain Original Articles To screen out the prospective biomarkers of viral encephalitis (VE), analyze the biological process and signaling pathways involved by differentially expressed proteins (DEPs). A total of 11 cerebrospinal fluid (CSF) samples with VE and 5 with non‐nervous system infection were used to perform label‐free proteomic techniques. Then, the bioinformatic analysis of DEPs was applied by Interproscan software. Moreover, 73 CSF samples in the VE group and 53 in the control group were used to verify the changes of some DEPs by enzyme‐linked immunosorbent assay (ELISA). Thirty‐nine DEPs were identified, including 18 upregulated DEPs and 21 downregulated DEPs. DEPs were mainly enriched in cell adhesion molecules by Kyoto Encyclopedia of Genes and Genomes analysis pathway analysis. The DEPs related to axon tissue were obviously downregulated and the most significant downregulated proteins were neurexin 3, neurofascin, and neuroligin 2 (NLGN2). Moreover, the protein expression of NLGN2 in the VE group was significantly higher than that in the control group by ELISA. The correlation analysis of NLGN2 in the VE group revealed that there was a weak positive correlation with CSF protein and a weak negative correlation with CSF chloride. The clinical VE may be closely related to NLGN2 and the cell adhesion molecule pathway. John Wiley and Sons Inc. 2022-05-04 /pmc/articles/PMC10528792/ /pubmed/37786892 http://dx.doi.org/10.1002/ibra.12036 Text en © 2022 The Authors. Ibrain published by Affiliated Hospital of Zunyi Medical University and Wiley‐VCH GmbH. https://creativecommons.org/licenses/by/4.0/This is an open access article under the terms of the http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) License, which permits use, distribution and reproduction in any medium, provided the original work is properly cited.
spellingShingle Original Articles
Wang, Qian
Yan, Shan‐Shan
Zhang, Jun‐Yan
Du, Ruo‐Lan
Xue, Lu‐Lu
Li, Juan
Yu, Chang‐Yin
The differentially expressed proteins related to clinical viral encephalitis revealed by proteomics
title The differentially expressed proteins related to clinical viral encephalitis revealed by proteomics
title_full The differentially expressed proteins related to clinical viral encephalitis revealed by proteomics
title_fullStr The differentially expressed proteins related to clinical viral encephalitis revealed by proteomics
title_full_unstemmed The differentially expressed proteins related to clinical viral encephalitis revealed by proteomics
title_short The differentially expressed proteins related to clinical viral encephalitis revealed by proteomics
title_sort differentially expressed proteins related to clinical viral encephalitis revealed by proteomics
topic Original Articles
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10528792/
https://www.ncbi.nlm.nih.gov/pubmed/37786892
http://dx.doi.org/10.1002/ibra.12036
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