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Machine Learning CT-Based Automatic Nodal Segmentation and PET Semi-Quantification of Intraoperative (68)Ga-PSMA-11 PET/CT Images in High-Risk Prostate Cancer: A Pilot Study

High-resolution intraoperative PET/CT specimen imaging, coupled with prostate-specific membrane antigen (PSMA) molecular targeting, holds great potential for the rapid ex vivo identification of disease localizations in high-risk prostate cancer patients undergoing surgery. However, the accurate anal...

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Autores principales: Rovera, Guido, Grimaldi, Serena, Oderda, Marco, Finessi, Monica, Giannini, Valentina, Passera, Roberto, Gontero, Paolo, Deandreis, Désirée
Formato: Online Artículo Texto
Lenguaje:English
Publicado: MDPI 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10529304/
https://www.ncbi.nlm.nih.gov/pubmed/37761380
http://dx.doi.org/10.3390/diagnostics13183013
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author Rovera, Guido
Grimaldi, Serena
Oderda, Marco
Finessi, Monica
Giannini, Valentina
Passera, Roberto
Gontero, Paolo
Deandreis, Désirée
author_facet Rovera, Guido
Grimaldi, Serena
Oderda, Marco
Finessi, Monica
Giannini, Valentina
Passera, Roberto
Gontero, Paolo
Deandreis, Désirée
author_sort Rovera, Guido
collection PubMed
description High-resolution intraoperative PET/CT specimen imaging, coupled with prostate-specific membrane antigen (PSMA) molecular targeting, holds great potential for the rapid ex vivo identification of disease localizations in high-risk prostate cancer patients undergoing surgery. However, the accurate analysis of radiotracer uptake would require time-consuming manual volumetric segmentation of 3D images. The aim of this study was to test the feasibility of using machine learning to perform automatic nodal segmentation of intraoperative (68)Ga-PSMA-11 PET/CT specimen images. Six (n = 6) lymph-nodal specimens were imaged in the operating room after an e.v. injection of 2.1 MBq/kg of (68)Ga-PSMA-11. A machine learning-based approach for automatic lymph-nodal segmentation was developed using only open-source Python libraries (Scikit-learn, SciPy, Scikit-image). The implementation of a k-means clustering algorithm (n = 3 clusters) allowed to identify lymph-nodal structures by leveraging differences in tissue density. Refinement of the segmentation masks was performed using morphological operations and 2D/3D-features filtering. Compared to manual segmentation (ITK-SNAP v4.0.1), the automatic segmentation model showed promising results in terms of weighted average precision (97–99%), recall (68–81%), Dice coefficient (80–88%) and Jaccard index (67–79%). Finally, the ML-based segmentation masks allowed to automatically compute semi-quantitative PET metrics (i.e., SUVmax), thus holding promise for facilitating the semi-quantitative analysis of PET/CT images in the operating room.
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spelling pubmed-105293042023-09-28 Machine Learning CT-Based Automatic Nodal Segmentation and PET Semi-Quantification of Intraoperative (68)Ga-PSMA-11 PET/CT Images in High-Risk Prostate Cancer: A Pilot Study Rovera, Guido Grimaldi, Serena Oderda, Marco Finessi, Monica Giannini, Valentina Passera, Roberto Gontero, Paolo Deandreis, Désirée Diagnostics (Basel) Article High-resolution intraoperative PET/CT specimen imaging, coupled with prostate-specific membrane antigen (PSMA) molecular targeting, holds great potential for the rapid ex vivo identification of disease localizations in high-risk prostate cancer patients undergoing surgery. However, the accurate analysis of radiotracer uptake would require time-consuming manual volumetric segmentation of 3D images. The aim of this study was to test the feasibility of using machine learning to perform automatic nodal segmentation of intraoperative (68)Ga-PSMA-11 PET/CT specimen images. Six (n = 6) lymph-nodal specimens were imaged in the operating room after an e.v. injection of 2.1 MBq/kg of (68)Ga-PSMA-11. A machine learning-based approach for automatic lymph-nodal segmentation was developed using only open-source Python libraries (Scikit-learn, SciPy, Scikit-image). The implementation of a k-means clustering algorithm (n = 3 clusters) allowed to identify lymph-nodal structures by leveraging differences in tissue density. Refinement of the segmentation masks was performed using morphological operations and 2D/3D-features filtering. Compared to manual segmentation (ITK-SNAP v4.0.1), the automatic segmentation model showed promising results in terms of weighted average precision (97–99%), recall (68–81%), Dice coefficient (80–88%) and Jaccard index (67–79%). Finally, the ML-based segmentation masks allowed to automatically compute semi-quantitative PET metrics (i.e., SUVmax), thus holding promise for facilitating the semi-quantitative analysis of PET/CT images in the operating room. MDPI 2023-09-21 /pmc/articles/PMC10529304/ /pubmed/37761380 http://dx.doi.org/10.3390/diagnostics13183013 Text en © 2023 by the authors. https://creativecommons.org/licenses/by/4.0/Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (https://creativecommons.org/licenses/by/4.0/).
spellingShingle Article
Rovera, Guido
Grimaldi, Serena
Oderda, Marco
Finessi, Monica
Giannini, Valentina
Passera, Roberto
Gontero, Paolo
Deandreis, Désirée
Machine Learning CT-Based Automatic Nodal Segmentation and PET Semi-Quantification of Intraoperative (68)Ga-PSMA-11 PET/CT Images in High-Risk Prostate Cancer: A Pilot Study
title Machine Learning CT-Based Automatic Nodal Segmentation and PET Semi-Quantification of Intraoperative (68)Ga-PSMA-11 PET/CT Images in High-Risk Prostate Cancer: A Pilot Study
title_full Machine Learning CT-Based Automatic Nodal Segmentation and PET Semi-Quantification of Intraoperative (68)Ga-PSMA-11 PET/CT Images in High-Risk Prostate Cancer: A Pilot Study
title_fullStr Machine Learning CT-Based Automatic Nodal Segmentation and PET Semi-Quantification of Intraoperative (68)Ga-PSMA-11 PET/CT Images in High-Risk Prostate Cancer: A Pilot Study
title_full_unstemmed Machine Learning CT-Based Automatic Nodal Segmentation and PET Semi-Quantification of Intraoperative (68)Ga-PSMA-11 PET/CT Images in High-Risk Prostate Cancer: A Pilot Study
title_short Machine Learning CT-Based Automatic Nodal Segmentation and PET Semi-Quantification of Intraoperative (68)Ga-PSMA-11 PET/CT Images in High-Risk Prostate Cancer: A Pilot Study
title_sort machine learning ct-based automatic nodal segmentation and pet semi-quantification of intraoperative (68)ga-psma-11 pet/ct images in high-risk prostate cancer: a pilot study
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10529304/
https://www.ncbi.nlm.nih.gov/pubmed/37761380
http://dx.doi.org/10.3390/diagnostics13183013
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