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Keep It Simple: Using README Files to Advance Standardization in Chronobiology

Standardization plays a crucial role in ensuring the reliability, reproducibility, and interoperability of research data in the biomedical sciences. Metadata standards are one foundation for the FAIR (Findable, Accessible, Interoperable, and Reusable) principles of data management. They facilitate d...

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Detalles Bibliográficos
Autores principales: Zieliński, Tomasz, Hodge, James J. L., Millar, Andrew J.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: MDPI 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10529918/
https://www.ncbi.nlm.nih.gov/pubmed/37754351
http://dx.doi.org/10.3390/clockssleep5030033
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author Zieliński, Tomasz
Hodge, James J. L.
Millar, Andrew J.
author_facet Zieliński, Tomasz
Hodge, James J. L.
Millar, Andrew J.
author_sort Zieliński, Tomasz
collection PubMed
description Standardization plays a crucial role in ensuring the reliability, reproducibility, and interoperability of research data in the biomedical sciences. Metadata standards are one foundation for the FAIR (Findable, Accessible, Interoperable, and Reusable) principles of data management. They facilitate data discovery, understanding, and reuse. However, the adoption of metadata standards in biological research lags in practice. Barriers such as complexity, lack of incentives, technical challenges, resource constraints, and resistance to change hinder widespread adoption. In the field of chronobiology, standardization is essential but faces particular challenges due to the longitudinal nature of experimental data, diverse model organisms, and varied measurement techniques. To address these challenges, we propose an approach that emphasizes simplicity and practicality: the development of README templates tailored for particular data types and species. Through this opinion article, our intention is to initiate a dialogue and commence a community-driven standardization process by engaging potential contributors and collaborators.
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spelling pubmed-105299182023-09-28 Keep It Simple: Using README Files to Advance Standardization in Chronobiology Zieliński, Tomasz Hodge, James J. L. Millar, Andrew J. Clocks Sleep Opinion Standardization plays a crucial role in ensuring the reliability, reproducibility, and interoperability of research data in the biomedical sciences. Metadata standards are one foundation for the FAIR (Findable, Accessible, Interoperable, and Reusable) principles of data management. They facilitate data discovery, understanding, and reuse. However, the adoption of metadata standards in biological research lags in practice. Barriers such as complexity, lack of incentives, technical challenges, resource constraints, and resistance to change hinder widespread adoption. In the field of chronobiology, standardization is essential but faces particular challenges due to the longitudinal nature of experimental data, diverse model organisms, and varied measurement techniques. To address these challenges, we propose an approach that emphasizes simplicity and practicality: the development of README templates tailored for particular data types and species. Through this opinion article, our intention is to initiate a dialogue and commence a community-driven standardization process by engaging potential contributors and collaborators. MDPI 2023-08-30 /pmc/articles/PMC10529918/ /pubmed/37754351 http://dx.doi.org/10.3390/clockssleep5030033 Text en © 2023 by the authors. https://creativecommons.org/licenses/by/4.0/Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (https://creativecommons.org/licenses/by/4.0/).
spellingShingle Opinion
Zieliński, Tomasz
Hodge, James J. L.
Millar, Andrew J.
Keep It Simple: Using README Files to Advance Standardization in Chronobiology
title Keep It Simple: Using README Files to Advance Standardization in Chronobiology
title_full Keep It Simple: Using README Files to Advance Standardization in Chronobiology
title_fullStr Keep It Simple: Using README Files to Advance Standardization in Chronobiology
title_full_unstemmed Keep It Simple: Using README Files to Advance Standardization in Chronobiology
title_short Keep It Simple: Using README Files to Advance Standardization in Chronobiology
title_sort keep it simple: using readme files to advance standardization in chronobiology
topic Opinion
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10529918/
https://www.ncbi.nlm.nih.gov/pubmed/37754351
http://dx.doi.org/10.3390/clockssleep5030033
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