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Development of a Macrophage-Related Risk Model for Metastatic Melanoma
As a metastasis-prone malignancy, the metastatic form and location of melanoma seriously affect its prognosis. Although effective surgical methods and targeted drugs are available to enable the treatment of carcinoma in situ, for metastatic tumors, the diagnosis, prognosis assessment and development...
Autores principales: | , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
MDPI
2023
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10530689/ https://www.ncbi.nlm.nih.gov/pubmed/37762054 http://dx.doi.org/10.3390/ijms241813752 |
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author | Li, Zhaoxiang Zhang, Xinyuan Jin, Quanxin Zhang, Qi Yue, Qi Fujimoto, Manabu Jin, Guihua |
author_facet | Li, Zhaoxiang Zhang, Xinyuan Jin, Quanxin Zhang, Qi Yue, Qi Fujimoto, Manabu Jin, Guihua |
author_sort | Li, Zhaoxiang |
collection | PubMed |
description | As a metastasis-prone malignancy, the metastatic form and location of melanoma seriously affect its prognosis. Although effective surgical methods and targeted drugs are available to enable the treatment of carcinoma in situ, for metastatic tumors, the diagnosis, prognosis assessment and development of immunotherapy are still pending. This study aims to integrate multiple bioinformatics approaches to identify immune-related molecular targets viable for the treatment and prognostic assessment of metastatic melanoma, thus providing new strategies for its use as an immunotherapy. Immunoinfiltration analysis revealed that M1-type macrophages have significant infiltration differences in melanoma development and metastasis. In total, 349 genes differentially expressed in M1-type macrophages and M2-type macrophages were extracted from the MSigDB database. Then we derived an intersection of these genes and 1111 melanoma metastasis-related genes from the GEO database, and 31 intersected genes identified as melanoma macrophage immunomarkers (MMIMs) were obtained. Based on MMIMs, a risk model was constructed using the Lasso algorithm and regression analysis, which contained 10 genes (NMI, SNTB2, SLC1A4, PDE4B, CLEC2B, IFI27, COL1A2, MAF, LAMP3 and CCDC69). Patients with high+ risk scores calculated via the model have low levels of infiltration by CD8(+) T cells and macrophages, which implies a poor prognosis for patients with metastatic cancer. DCA decision and nomogram curves verify the high sensitivity and specificity of this model for metastatic cancer patients. In addition, 28 miRNAs, 90 transcription factors and 29 potential drugs were predicted by targeting the 10 MMIMs derived from this model. Overall, we developed and validated immune-related prognostic models, which accurately reflected the prognostic and immune infiltration characteristics of patients with melanoma metastasis. The 10 MMIMs may also be prospective targets for immunotherapy. |
format | Online Article Text |
id | pubmed-10530689 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2023 |
publisher | MDPI |
record_format | MEDLINE/PubMed |
spelling | pubmed-105306892023-09-28 Development of a Macrophage-Related Risk Model for Metastatic Melanoma Li, Zhaoxiang Zhang, Xinyuan Jin, Quanxin Zhang, Qi Yue, Qi Fujimoto, Manabu Jin, Guihua Int J Mol Sci Article As a metastasis-prone malignancy, the metastatic form and location of melanoma seriously affect its prognosis. Although effective surgical methods and targeted drugs are available to enable the treatment of carcinoma in situ, for metastatic tumors, the diagnosis, prognosis assessment and development of immunotherapy are still pending. This study aims to integrate multiple bioinformatics approaches to identify immune-related molecular targets viable for the treatment and prognostic assessment of metastatic melanoma, thus providing new strategies for its use as an immunotherapy. Immunoinfiltration analysis revealed that M1-type macrophages have significant infiltration differences in melanoma development and metastasis. In total, 349 genes differentially expressed in M1-type macrophages and M2-type macrophages were extracted from the MSigDB database. Then we derived an intersection of these genes and 1111 melanoma metastasis-related genes from the GEO database, and 31 intersected genes identified as melanoma macrophage immunomarkers (MMIMs) were obtained. Based on MMIMs, a risk model was constructed using the Lasso algorithm and regression analysis, which contained 10 genes (NMI, SNTB2, SLC1A4, PDE4B, CLEC2B, IFI27, COL1A2, MAF, LAMP3 and CCDC69). Patients with high+ risk scores calculated via the model have low levels of infiltration by CD8(+) T cells and macrophages, which implies a poor prognosis for patients with metastatic cancer. DCA decision and nomogram curves verify the high sensitivity and specificity of this model for metastatic cancer patients. In addition, 28 miRNAs, 90 transcription factors and 29 potential drugs were predicted by targeting the 10 MMIMs derived from this model. Overall, we developed and validated immune-related prognostic models, which accurately reflected the prognostic and immune infiltration characteristics of patients with melanoma metastasis. The 10 MMIMs may also be prospective targets for immunotherapy. MDPI 2023-09-06 /pmc/articles/PMC10530689/ /pubmed/37762054 http://dx.doi.org/10.3390/ijms241813752 Text en © 2023 by the authors. https://creativecommons.org/licenses/by/4.0/Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (https://creativecommons.org/licenses/by/4.0/). |
spellingShingle | Article Li, Zhaoxiang Zhang, Xinyuan Jin, Quanxin Zhang, Qi Yue, Qi Fujimoto, Manabu Jin, Guihua Development of a Macrophage-Related Risk Model for Metastatic Melanoma |
title | Development of a Macrophage-Related Risk Model for Metastatic Melanoma |
title_full | Development of a Macrophage-Related Risk Model for Metastatic Melanoma |
title_fullStr | Development of a Macrophage-Related Risk Model for Metastatic Melanoma |
title_full_unstemmed | Development of a Macrophage-Related Risk Model for Metastatic Melanoma |
title_short | Development of a Macrophage-Related Risk Model for Metastatic Melanoma |
title_sort | development of a macrophage-related risk model for metastatic melanoma |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10530689/ https://www.ncbi.nlm.nih.gov/pubmed/37762054 http://dx.doi.org/10.3390/ijms241813752 |
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