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Identification and Characterization of ABCG15—A Gene Required for Exocarp Color Differentiation in Pear

Exocarp color is a commercially essential quality for pear which can be divided into two types: green and russet. The occurrence of russet color is associated with deficiencies and defects in the cuticular and epidermal layers, which affect the structure of the cell wall and the deposition of suberi...

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Autores principales: Zhang, Simeng, Xu, Jiayu, Zhang, Ying, Cao, Yufen
Formato: Online Artículo Texto
Lenguaje:English
Publicado: MDPI 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10530978/
https://www.ncbi.nlm.nih.gov/pubmed/37761967
http://dx.doi.org/10.3390/genes14091827
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author Zhang, Simeng
Xu, Jiayu
Zhang, Ying
Cao, Yufen
author_facet Zhang, Simeng
Xu, Jiayu
Zhang, Ying
Cao, Yufen
author_sort Zhang, Simeng
collection PubMed
description Exocarp color is a commercially essential quality for pear which can be divided into two types: green and russet. The occurrence of russet color is associated with deficiencies and defects in the cuticular and epidermal layers, which affect the structure of the cell wall and the deposition of suberin. Until now, the genetic basics triggering this trait have not been well understood, and limited genes have been identified for the trait. To figure out the gene controlling the trait of exocarp color, we perform a comprehensive genome-wide association study, and we describe the candidate genes. One gene encoding the ABCG protein has been verified to be associated with the trait, using an integrative analysis of the metabolomic and transcriptomic data. This review covers a variety of omics resources, which provide a valuable resource for identifying gene-controlled traits of interest. The findings in this study help to elucidate the genetic components responsible for the trait of exocarp color in pear, and the implications of these findings for future pear breeding are evaluated.
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spelling pubmed-105309782023-09-28 Identification and Characterization of ABCG15—A Gene Required for Exocarp Color Differentiation in Pear Zhang, Simeng Xu, Jiayu Zhang, Ying Cao, Yufen Genes (Basel) Article Exocarp color is a commercially essential quality for pear which can be divided into two types: green and russet. The occurrence of russet color is associated with deficiencies and defects in the cuticular and epidermal layers, which affect the structure of the cell wall and the deposition of suberin. Until now, the genetic basics triggering this trait have not been well understood, and limited genes have been identified for the trait. To figure out the gene controlling the trait of exocarp color, we perform a comprehensive genome-wide association study, and we describe the candidate genes. One gene encoding the ABCG protein has been verified to be associated with the trait, using an integrative analysis of the metabolomic and transcriptomic data. This review covers a variety of omics resources, which provide a valuable resource for identifying gene-controlled traits of interest. The findings in this study help to elucidate the genetic components responsible for the trait of exocarp color in pear, and the implications of these findings for future pear breeding are evaluated. MDPI 2023-09-21 /pmc/articles/PMC10530978/ /pubmed/37761967 http://dx.doi.org/10.3390/genes14091827 Text en © 2023 by the authors. https://creativecommons.org/licenses/by/4.0/Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (https://creativecommons.org/licenses/by/4.0/).
spellingShingle Article
Zhang, Simeng
Xu, Jiayu
Zhang, Ying
Cao, Yufen
Identification and Characterization of ABCG15—A Gene Required for Exocarp Color Differentiation in Pear
title Identification and Characterization of ABCG15—A Gene Required for Exocarp Color Differentiation in Pear
title_full Identification and Characterization of ABCG15—A Gene Required for Exocarp Color Differentiation in Pear
title_fullStr Identification and Characterization of ABCG15—A Gene Required for Exocarp Color Differentiation in Pear
title_full_unstemmed Identification and Characterization of ABCG15—A Gene Required for Exocarp Color Differentiation in Pear
title_short Identification and Characterization of ABCG15—A Gene Required for Exocarp Color Differentiation in Pear
title_sort identification and characterization of abcg15—a gene required for exocarp color differentiation in pear
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10530978/
https://www.ncbi.nlm.nih.gov/pubmed/37761967
http://dx.doi.org/10.3390/genes14091827
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