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Comprehensive Identification of the Pum Gene Family and Its Involvement in Kernel Development in Maize

The Pumilio (Pum) RNA-binding protein family regulates post-transcription and plays crucial roles in stress response and growth. However, little is known about Pum in plants. In this study, a total of 19 ZmPum genes were identified and classified into two groups in maize. Although each ZmPum contain...

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Autores principales: Feng, Wenqi, Zhang, Hongwanjun, Cao, Yang, Yang, Cheng, Khalid, Muhammad Hayder Bin, Yang, Qingqing, Li, Wanchen, Wang, Yingge, Fu, Fengling, Yu, Haoqiang
Formato: Online Artículo Texto
Lenguaje:English
Publicado: MDPI 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10530998/
https://www.ncbi.nlm.nih.gov/pubmed/37762337
http://dx.doi.org/10.3390/ijms241814036
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author Feng, Wenqi
Zhang, Hongwanjun
Cao, Yang
Yang, Cheng
Khalid, Muhammad Hayder Bin
Yang, Qingqing
Li, Wanchen
Wang, Yingge
Fu, Fengling
Yu, Haoqiang
author_facet Feng, Wenqi
Zhang, Hongwanjun
Cao, Yang
Yang, Cheng
Khalid, Muhammad Hayder Bin
Yang, Qingqing
Li, Wanchen
Wang, Yingge
Fu, Fengling
Yu, Haoqiang
author_sort Feng, Wenqi
collection PubMed
description The Pumilio (Pum) RNA-binding protein family regulates post-transcription and plays crucial roles in stress response and growth. However, little is known about Pum in plants. In this study, a total of 19 ZmPum genes were identified and classified into two groups in maize. Although each ZmPum contains the conserved Pum domain, the ZmPum members show diversity in the gene and protein architectures, physicochemical properties, chromosomal location, collinearity, cis-elements, and expression patterns. The typical ZmPum proteins have eight α-helices repeats, except for ZmPum2, 3, 5, 7, and 14, which have fewer α-helices. Moreover, we examined the expression profiles of ZmPum genes and found their involvement in kernel development. Except for ZmPum2, ZmPum genes are expressed in maize embryos, endosperms, or whole seeds. Notably, ZmPum4, 7, and 13 exhibited dramatically high expression levels during seed development. The study not only contributes valuable information for further validating the functions of ZmPum genes but also provides insights for improvement and enhancing maize yield.
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spelling pubmed-105309982023-09-28 Comprehensive Identification of the Pum Gene Family and Its Involvement in Kernel Development in Maize Feng, Wenqi Zhang, Hongwanjun Cao, Yang Yang, Cheng Khalid, Muhammad Hayder Bin Yang, Qingqing Li, Wanchen Wang, Yingge Fu, Fengling Yu, Haoqiang Int J Mol Sci Article The Pumilio (Pum) RNA-binding protein family regulates post-transcription and plays crucial roles in stress response and growth. However, little is known about Pum in plants. In this study, a total of 19 ZmPum genes were identified and classified into two groups in maize. Although each ZmPum contains the conserved Pum domain, the ZmPum members show diversity in the gene and protein architectures, physicochemical properties, chromosomal location, collinearity, cis-elements, and expression patterns. The typical ZmPum proteins have eight α-helices repeats, except for ZmPum2, 3, 5, 7, and 14, which have fewer α-helices. Moreover, we examined the expression profiles of ZmPum genes and found their involvement in kernel development. Except for ZmPum2, ZmPum genes are expressed in maize embryos, endosperms, or whole seeds. Notably, ZmPum4, 7, and 13 exhibited dramatically high expression levels during seed development. The study not only contributes valuable information for further validating the functions of ZmPum genes but also provides insights for improvement and enhancing maize yield. MDPI 2023-09-13 /pmc/articles/PMC10530998/ /pubmed/37762337 http://dx.doi.org/10.3390/ijms241814036 Text en © 2023 by the authors. https://creativecommons.org/licenses/by/4.0/Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (https://creativecommons.org/licenses/by/4.0/).
spellingShingle Article
Feng, Wenqi
Zhang, Hongwanjun
Cao, Yang
Yang, Cheng
Khalid, Muhammad Hayder Bin
Yang, Qingqing
Li, Wanchen
Wang, Yingge
Fu, Fengling
Yu, Haoqiang
Comprehensive Identification of the Pum Gene Family and Its Involvement in Kernel Development in Maize
title Comprehensive Identification of the Pum Gene Family and Its Involvement in Kernel Development in Maize
title_full Comprehensive Identification of the Pum Gene Family and Its Involvement in Kernel Development in Maize
title_fullStr Comprehensive Identification of the Pum Gene Family and Its Involvement in Kernel Development in Maize
title_full_unstemmed Comprehensive Identification of the Pum Gene Family and Its Involvement in Kernel Development in Maize
title_short Comprehensive Identification of the Pum Gene Family and Its Involvement in Kernel Development in Maize
title_sort comprehensive identification of the pum gene family and its involvement in kernel development in maize
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10530998/
https://www.ncbi.nlm.nih.gov/pubmed/37762337
http://dx.doi.org/10.3390/ijms241814036
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