Cargando…

Taxonomic Identification of the Arctic Strain Nocardioides Arcticus Sp. Nov. and Global Transcriptomic Analysis in Response to Hydrogen Peroxide Stress

Microorganisms living in polar regions rely on specialized mechanisms to adapt to extreme environments. The study of their stress adaptation mechanisms is a hot topic in international microbiology research. In this study, a bacterial strain (Arc9.136) isolated from Arctic marine sediments was select...

Descripción completa

Detalles Bibliográficos
Autores principales: Cong, Bailin, Zhang, Hui, Li, Shuang, Liu, Shenghao, Lin, Jing, Deng, Aifang, Liu, Wenqi, Yang, Yan
Formato: Online Artículo Texto
Lenguaje:English
Publicado: MDPI 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10531085/
https://www.ncbi.nlm.nih.gov/pubmed/37762246
http://dx.doi.org/10.3390/ijms241813943
_version_ 1785111638220734464
author Cong, Bailin
Zhang, Hui
Li, Shuang
Liu, Shenghao
Lin, Jing
Deng, Aifang
Liu, Wenqi
Yang, Yan
author_facet Cong, Bailin
Zhang, Hui
Li, Shuang
Liu, Shenghao
Lin, Jing
Deng, Aifang
Liu, Wenqi
Yang, Yan
author_sort Cong, Bailin
collection PubMed
description Microorganisms living in polar regions rely on specialized mechanisms to adapt to extreme environments. The study of their stress adaptation mechanisms is a hot topic in international microbiology research. In this study, a bacterial strain (Arc9.136) isolated from Arctic marine sediments was selected to implement polyphasic taxonomic identification based on factors such as genetic characteristics, physiological and biochemical properties, and chemical composition. The results showed that strain Arc9.136 is classified to the genus Nocardioides, for which the name Nocardioides arcticus sp. nov. is proposed. The ozone hole over the Arctic leads to increased ultraviolet (UV-B) radiation, and low temperatures lead to increased dissolved content in seawater. These extreme environmental conditions result in oxidative stress, inducing a strong response in microorganisms. Based on the functional classification of significantly differentially expressed genes under 1 mM H(2)O(2) stress, we suspect that Arc9.136 may respond to oxidative stress through the following strategies: (1) efficient utilization of various carbon sources to improve carbohydrate transport and metabolism; (2) altering ion transport and metabolism by decreasing the uptake of divalent iron (to avoid the Fenton reaction) and increasing the utilization of trivalent iron (to maintain intracellular iron homeostasis); (3) increasing the level of cell replication, DNA repair, and defense functions, repairing DNA damage caused by H(2)O(2); (4) and changing the composition of lipids in the cell membrane and reducing the sensitivity of lipid peroxidation. This study provides insights into the stress resistance mechanisms of microorganisms in extreme environments and highlights the potential for developing low-temperature active microbial resources.
format Online
Article
Text
id pubmed-10531085
institution National Center for Biotechnology Information
language English
publishDate 2023
publisher MDPI
record_format MEDLINE/PubMed
spelling pubmed-105310852023-09-28 Taxonomic Identification of the Arctic Strain Nocardioides Arcticus Sp. Nov. and Global Transcriptomic Analysis in Response to Hydrogen Peroxide Stress Cong, Bailin Zhang, Hui Li, Shuang Liu, Shenghao Lin, Jing Deng, Aifang Liu, Wenqi Yang, Yan Int J Mol Sci Article Microorganisms living in polar regions rely on specialized mechanisms to adapt to extreme environments. The study of their stress adaptation mechanisms is a hot topic in international microbiology research. In this study, a bacterial strain (Arc9.136) isolated from Arctic marine sediments was selected to implement polyphasic taxonomic identification based on factors such as genetic characteristics, physiological and biochemical properties, and chemical composition. The results showed that strain Arc9.136 is classified to the genus Nocardioides, for which the name Nocardioides arcticus sp. nov. is proposed. The ozone hole over the Arctic leads to increased ultraviolet (UV-B) radiation, and low temperatures lead to increased dissolved content in seawater. These extreme environmental conditions result in oxidative stress, inducing a strong response in microorganisms. Based on the functional classification of significantly differentially expressed genes under 1 mM H(2)O(2) stress, we suspect that Arc9.136 may respond to oxidative stress through the following strategies: (1) efficient utilization of various carbon sources to improve carbohydrate transport and metabolism; (2) altering ion transport and metabolism by decreasing the uptake of divalent iron (to avoid the Fenton reaction) and increasing the utilization of trivalent iron (to maintain intracellular iron homeostasis); (3) increasing the level of cell replication, DNA repair, and defense functions, repairing DNA damage caused by H(2)O(2); (4) and changing the composition of lipids in the cell membrane and reducing the sensitivity of lipid peroxidation. This study provides insights into the stress resistance mechanisms of microorganisms in extreme environments and highlights the potential for developing low-temperature active microbial resources. MDPI 2023-09-11 /pmc/articles/PMC10531085/ /pubmed/37762246 http://dx.doi.org/10.3390/ijms241813943 Text en © 2023 by the authors. https://creativecommons.org/licenses/by/4.0/Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (https://creativecommons.org/licenses/by/4.0/).
spellingShingle Article
Cong, Bailin
Zhang, Hui
Li, Shuang
Liu, Shenghao
Lin, Jing
Deng, Aifang
Liu, Wenqi
Yang, Yan
Taxonomic Identification of the Arctic Strain Nocardioides Arcticus Sp. Nov. and Global Transcriptomic Analysis in Response to Hydrogen Peroxide Stress
title Taxonomic Identification of the Arctic Strain Nocardioides Arcticus Sp. Nov. and Global Transcriptomic Analysis in Response to Hydrogen Peroxide Stress
title_full Taxonomic Identification of the Arctic Strain Nocardioides Arcticus Sp. Nov. and Global Transcriptomic Analysis in Response to Hydrogen Peroxide Stress
title_fullStr Taxonomic Identification of the Arctic Strain Nocardioides Arcticus Sp. Nov. and Global Transcriptomic Analysis in Response to Hydrogen Peroxide Stress
title_full_unstemmed Taxonomic Identification of the Arctic Strain Nocardioides Arcticus Sp. Nov. and Global Transcriptomic Analysis in Response to Hydrogen Peroxide Stress
title_short Taxonomic Identification of the Arctic Strain Nocardioides Arcticus Sp. Nov. and Global Transcriptomic Analysis in Response to Hydrogen Peroxide Stress
title_sort taxonomic identification of the arctic strain nocardioides arcticus sp. nov. and global transcriptomic analysis in response to hydrogen peroxide stress
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10531085/
https://www.ncbi.nlm.nih.gov/pubmed/37762246
http://dx.doi.org/10.3390/ijms241813943
work_keys_str_mv AT congbailin taxonomicidentificationofthearcticstrainnocardioidesarcticusspnovandglobaltranscriptomicanalysisinresponsetohydrogenperoxidestress
AT zhanghui taxonomicidentificationofthearcticstrainnocardioidesarcticusspnovandglobaltranscriptomicanalysisinresponsetohydrogenperoxidestress
AT lishuang taxonomicidentificationofthearcticstrainnocardioidesarcticusspnovandglobaltranscriptomicanalysisinresponsetohydrogenperoxidestress
AT liushenghao taxonomicidentificationofthearcticstrainnocardioidesarcticusspnovandglobaltranscriptomicanalysisinresponsetohydrogenperoxidestress
AT linjing taxonomicidentificationofthearcticstrainnocardioidesarcticusspnovandglobaltranscriptomicanalysisinresponsetohydrogenperoxidestress
AT dengaifang taxonomicidentificationofthearcticstrainnocardioidesarcticusspnovandglobaltranscriptomicanalysisinresponsetohydrogenperoxidestress
AT liuwenqi taxonomicidentificationofthearcticstrainnocardioidesarcticusspnovandglobaltranscriptomicanalysisinresponsetohydrogenperoxidestress
AT yangyan taxonomicidentificationofthearcticstrainnocardioidesarcticusspnovandglobaltranscriptomicanalysisinresponsetohydrogenperoxidestress