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Few-shot out-of-distribution detection for automated screening in retinal OCT images using deep learning
Deep neural networks have been increasingly proposed for automated screening and diagnosis of retinal diseases from optical coherence tomography (OCT), but often provide high-confidence predictions on out-of-distribution (OOD) cases, compromising their clinical usage. With this in mind, we performed...
Autores principales: | , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Nature Publishing Group UK
2023
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10533534/ https://www.ncbi.nlm.nih.gov/pubmed/37758754 http://dx.doi.org/10.1038/s41598-023-43018-9 |
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author | Araújo, Teresa Aresta, Guilherme Schmidt-Erfurth, Ursula Bogunović, Hrvoje |
author_facet | Araújo, Teresa Aresta, Guilherme Schmidt-Erfurth, Ursula Bogunović, Hrvoje |
author_sort | Araújo, Teresa |
collection | PubMed |
description | Deep neural networks have been increasingly proposed for automated screening and diagnosis of retinal diseases from optical coherence tomography (OCT), but often provide high-confidence predictions on out-of-distribution (OOD) cases, compromising their clinical usage. With this in mind, we performed an in-depth comparative analysis of the state-of-the-art uncertainty estimation methods for OOD detection in retinal OCT imaging. The analysis was performed within the use-case of automated screening and staging of age-related macular degeneration (AMD), one of the leading causes of blindness worldwide, where we achieved a macro-average area under the curve (AUC) of 0.981 for AMD classification. We focus on a few-shot Outlier Exposure (OE) method and the detection of near-OOD cases that share pathomorphological characteristics with the inlier AMD classes. Scoring the OOD case based on the Cosine distance in the feature space from the penultimate network layer proved to be a robust approach for OOD detection, especially in combination with the OE. Using Cosine distance and only 8 outliers exposed per class, we were able to improve the near-OOD detection performance of the OE with Reject Bucket method by [Formula: see text] 10% compared to without OE, reaching an AUC of 0.937. The Cosine distance served as a robust metric for OOD detection of both known and unknown classes and should thus be considered as an alternative to the reject bucket class probability in OE approaches, especially in the few-shot scenario. The inclusion of these methodologies did not come at the expense of classification performance, and can substantially improve the reliability and trustworthiness of the resulting deep learning-based diagnostic systems in the context of retinal OCT. |
format | Online Article Text |
id | pubmed-10533534 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2023 |
publisher | Nature Publishing Group UK |
record_format | MEDLINE/PubMed |
spelling | pubmed-105335342023-09-29 Few-shot out-of-distribution detection for automated screening in retinal OCT images using deep learning Araújo, Teresa Aresta, Guilherme Schmidt-Erfurth, Ursula Bogunović, Hrvoje Sci Rep Article Deep neural networks have been increasingly proposed for automated screening and diagnosis of retinal diseases from optical coherence tomography (OCT), but often provide high-confidence predictions on out-of-distribution (OOD) cases, compromising their clinical usage. With this in mind, we performed an in-depth comparative analysis of the state-of-the-art uncertainty estimation methods for OOD detection in retinal OCT imaging. The analysis was performed within the use-case of automated screening and staging of age-related macular degeneration (AMD), one of the leading causes of blindness worldwide, where we achieved a macro-average area under the curve (AUC) of 0.981 for AMD classification. We focus on a few-shot Outlier Exposure (OE) method and the detection of near-OOD cases that share pathomorphological characteristics with the inlier AMD classes. Scoring the OOD case based on the Cosine distance in the feature space from the penultimate network layer proved to be a robust approach for OOD detection, especially in combination with the OE. Using Cosine distance and only 8 outliers exposed per class, we were able to improve the near-OOD detection performance of the OE with Reject Bucket method by [Formula: see text] 10% compared to without OE, reaching an AUC of 0.937. The Cosine distance served as a robust metric for OOD detection of both known and unknown classes and should thus be considered as an alternative to the reject bucket class probability in OE approaches, especially in the few-shot scenario. The inclusion of these methodologies did not come at the expense of classification performance, and can substantially improve the reliability and trustworthiness of the resulting deep learning-based diagnostic systems in the context of retinal OCT. Nature Publishing Group UK 2023-09-27 /pmc/articles/PMC10533534/ /pubmed/37758754 http://dx.doi.org/10.1038/s41598-023-43018-9 Text en © The Author(s) 2023 https://creativecommons.org/licenses/by/4.0/Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) . |
spellingShingle | Article Araújo, Teresa Aresta, Guilherme Schmidt-Erfurth, Ursula Bogunović, Hrvoje Few-shot out-of-distribution detection for automated screening in retinal OCT images using deep learning |
title | Few-shot out-of-distribution detection for automated screening in retinal OCT images using deep learning |
title_full | Few-shot out-of-distribution detection for automated screening in retinal OCT images using deep learning |
title_fullStr | Few-shot out-of-distribution detection for automated screening in retinal OCT images using deep learning |
title_full_unstemmed | Few-shot out-of-distribution detection for automated screening in retinal OCT images using deep learning |
title_short | Few-shot out-of-distribution detection for automated screening in retinal OCT images using deep learning |
title_sort | few-shot out-of-distribution detection for automated screening in retinal oct images using deep learning |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10533534/ https://www.ncbi.nlm.nih.gov/pubmed/37758754 http://dx.doi.org/10.1038/s41598-023-43018-9 |
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