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Deep learning classification of systemic sclerosis from multi-site photoplethysmography signals

Introduction: A pilot study assessing a novel approach to identify patients with Systemic Sclerosis (SSc) using deep learning analysis of multi-site photoplethysmography (PPG) waveforms (“DL-PPG”). Methods: PPG recordings having baseline, unilateral arm pressure cuff occlusion and reactive hyperaemi...

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Autores principales: Iqbal, Sadaf, Bacardit, Jaume, Griffiths, Bridget, Allen, John
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Frontiers Media S.A. 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10534001/
https://www.ncbi.nlm.nih.gov/pubmed/37781233
http://dx.doi.org/10.3389/fphys.2023.1242807
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author Iqbal, Sadaf
Bacardit, Jaume
Griffiths, Bridget
Allen, John
author_facet Iqbal, Sadaf
Bacardit, Jaume
Griffiths, Bridget
Allen, John
author_sort Iqbal, Sadaf
collection PubMed
description Introduction: A pilot study assessing a novel approach to identify patients with Systemic Sclerosis (SSc) using deep learning analysis of multi-site photoplethysmography (PPG) waveforms (“DL-PPG”). Methods: PPG recordings having baseline, unilateral arm pressure cuff occlusion and reactive hyperaemia flush phases from 6 body sites were studied in 51 Controls and 20 SSc patients. RGB scalogram images were obtained from the PPG, using the continuous wavelet transform (CWT). 2 different pre-trained convolutional neural networks (CNNs, namely, GoogLeNet and EfficientNetB0) were trained to classify the SSc and Control groups, evaluating their performance using 10-fold stratified cross validation (CV). Their classification performance (i.e., accuracy, sensitivity, and specificity, with 95% confidence intervals) was also compared to traditional machine learning (ML), i.e., Linear Discriminant Analysis (LDA) and K-Nearest Neighbour (KNN). Results: On a participant basis DL-PPG accuracy, sensitivity and specificity for GoogLeNet were 83.1 (72.3–90.9), 75.0 (50.9–91.3) and 86.3 (73.7–94.3)% respectively, and for EfficientNetB0 were 87.3 (77.2–94.0), 80.0 (56.3–94.3) and 90.1 (78.6–96.7)%. The corresponding results for ML classification using LDA were 66.2 (53.9–77.0), 65.0 (40.8–84.6) and 66.7 (52.1–79.2)% respectively, and for KNN were 76.1 (64.5–85.4), 40.0 (19.1–63.9), and 90.2 (78.6–96.7)% respectively. Discussion: This study shows the potential of DL-PPG classification using CNNs to detect SSc. EfficientNetB0 gave an overall improved performance compared to GoogLeNet, with both CNNs performing better than the traditional ML methods tested. Our automatic AI approach, using transfer learning, could offer significant benefits for SSc diagnostics in a variety of clinical settings where low-cost portable and easy-to-use diagnostics can be beneficial.
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spelling pubmed-105340012023-09-29 Deep learning classification of systemic sclerosis from multi-site photoplethysmography signals Iqbal, Sadaf Bacardit, Jaume Griffiths, Bridget Allen, John Front Physiol Physiology Introduction: A pilot study assessing a novel approach to identify patients with Systemic Sclerosis (SSc) using deep learning analysis of multi-site photoplethysmography (PPG) waveforms (“DL-PPG”). Methods: PPG recordings having baseline, unilateral arm pressure cuff occlusion and reactive hyperaemia flush phases from 6 body sites were studied in 51 Controls and 20 SSc patients. RGB scalogram images were obtained from the PPG, using the continuous wavelet transform (CWT). 2 different pre-trained convolutional neural networks (CNNs, namely, GoogLeNet and EfficientNetB0) were trained to classify the SSc and Control groups, evaluating their performance using 10-fold stratified cross validation (CV). Their classification performance (i.e., accuracy, sensitivity, and specificity, with 95% confidence intervals) was also compared to traditional machine learning (ML), i.e., Linear Discriminant Analysis (LDA) and K-Nearest Neighbour (KNN). Results: On a participant basis DL-PPG accuracy, sensitivity and specificity for GoogLeNet were 83.1 (72.3–90.9), 75.0 (50.9–91.3) and 86.3 (73.7–94.3)% respectively, and for EfficientNetB0 were 87.3 (77.2–94.0), 80.0 (56.3–94.3) and 90.1 (78.6–96.7)%. The corresponding results for ML classification using LDA were 66.2 (53.9–77.0), 65.0 (40.8–84.6) and 66.7 (52.1–79.2)% respectively, and for KNN were 76.1 (64.5–85.4), 40.0 (19.1–63.9), and 90.2 (78.6–96.7)% respectively. Discussion: This study shows the potential of DL-PPG classification using CNNs to detect SSc. EfficientNetB0 gave an overall improved performance compared to GoogLeNet, with both CNNs performing better than the traditional ML methods tested. Our automatic AI approach, using transfer learning, could offer significant benefits for SSc diagnostics in a variety of clinical settings where low-cost portable and easy-to-use diagnostics can be beneficial. Frontiers Media S.A. 2023-09-13 /pmc/articles/PMC10534001/ /pubmed/37781233 http://dx.doi.org/10.3389/fphys.2023.1242807 Text en Copyright © 2023 Iqbal, Bacardit, Griffiths and Allen. https://creativecommons.org/licenses/by/4.0/This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.
spellingShingle Physiology
Iqbal, Sadaf
Bacardit, Jaume
Griffiths, Bridget
Allen, John
Deep learning classification of systemic sclerosis from multi-site photoplethysmography signals
title Deep learning classification of systemic sclerosis from multi-site photoplethysmography signals
title_full Deep learning classification of systemic sclerosis from multi-site photoplethysmography signals
title_fullStr Deep learning classification of systemic sclerosis from multi-site photoplethysmography signals
title_full_unstemmed Deep learning classification of systemic sclerosis from multi-site photoplethysmography signals
title_short Deep learning classification of systemic sclerosis from multi-site photoplethysmography signals
title_sort deep learning classification of systemic sclerosis from multi-site photoplethysmography signals
topic Physiology
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10534001/
https://www.ncbi.nlm.nih.gov/pubmed/37781233
http://dx.doi.org/10.3389/fphys.2023.1242807
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