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IRv2-Net: A Deep Learning Framework for Enhanced Polyp Segmentation Performance Integrating InceptionResNetV2 and UNet Architecture with Test Time Augmentation Techniques

Colorectal polyps in the colon or rectum are precancerous growths that can lead to a more severe disease called colorectal cancer. Accurate segmentation of polyps using medical imaging data is essential for effective diagnosis. However, manual segmentation by endoscopists can be time-consuming, erro...

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Autores principales: Ahamed, Md. Faysal, Syfullah, Md. Khalid, Sarkar, Ovi, Islam, Md. Tohidul, Nahiduzzaman, Md., Islam, Md. Rabiul, Khandakar, Amith, Ayari, Mohamed Arselene, Chowdhury, Muhammad E. H.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: MDPI 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10534485/
https://www.ncbi.nlm.nih.gov/pubmed/37765780
http://dx.doi.org/10.3390/s23187724
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author Ahamed, Md. Faysal
Syfullah, Md. Khalid
Sarkar, Ovi
Islam, Md. Tohidul
Nahiduzzaman, Md.
Islam, Md. Rabiul
Khandakar, Amith
Ayari, Mohamed Arselene
Chowdhury, Muhammad E. H.
author_facet Ahamed, Md. Faysal
Syfullah, Md. Khalid
Sarkar, Ovi
Islam, Md. Tohidul
Nahiduzzaman, Md.
Islam, Md. Rabiul
Khandakar, Amith
Ayari, Mohamed Arselene
Chowdhury, Muhammad E. H.
author_sort Ahamed, Md. Faysal
collection PubMed
description Colorectal polyps in the colon or rectum are precancerous growths that can lead to a more severe disease called colorectal cancer. Accurate segmentation of polyps using medical imaging data is essential for effective diagnosis. However, manual segmentation by endoscopists can be time-consuming, error-prone, and expensive, leading to a high rate of missed anomalies. To solve this problem, an automated diagnostic system based on deep learning algorithms is proposed to find polyps. The proposed IRv2-Net model is developed using the UNet architecture with a pre-trained InceptionResNetV2 encoder to extract most features from the input samples. The Test Time Augmentation (TTA) technique, which utilizes the characteristics of the original, horizontal, and vertical flips, is used to gain precise boundary information and multi-scale image features. The performance of numerous state-of-the-art (SOTA) models is compared using several metrics such as accuracy, Dice Similarity Coefficients (DSC), Intersection Over Union (IoU), precision, and recall. The proposed model is tested on the Kvasir-SEG and CVC-ClinicDB datasets, demonstrating superior performance in handling unseen real-time data. It achieves the highest area coverage in the area under the Receiver Operating Characteristic (ROC-AUC) and area under Precision-Recall (AUC-PR) curves. The model exhibits excellent qualitative testing outcomes across different types of polyps, including more oversized, smaller, over-saturated, sessile, or flat polyps, within the same dataset and across different datasets. Our approach can significantly minimize the number of missed rating difficulties. Lastly, a graphical interface is developed for producing the mask in real-time. The findings of this study have potential applications in clinical colonoscopy procedures and can serve based on further research and development.
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spelling pubmed-105344852023-09-29 IRv2-Net: A Deep Learning Framework for Enhanced Polyp Segmentation Performance Integrating InceptionResNetV2 and UNet Architecture with Test Time Augmentation Techniques Ahamed, Md. Faysal Syfullah, Md. Khalid Sarkar, Ovi Islam, Md. Tohidul Nahiduzzaman, Md. Islam, Md. Rabiul Khandakar, Amith Ayari, Mohamed Arselene Chowdhury, Muhammad E. H. Sensors (Basel) Article Colorectal polyps in the colon or rectum are precancerous growths that can lead to a more severe disease called colorectal cancer. Accurate segmentation of polyps using medical imaging data is essential for effective diagnosis. However, manual segmentation by endoscopists can be time-consuming, error-prone, and expensive, leading to a high rate of missed anomalies. To solve this problem, an automated diagnostic system based on deep learning algorithms is proposed to find polyps. The proposed IRv2-Net model is developed using the UNet architecture with a pre-trained InceptionResNetV2 encoder to extract most features from the input samples. The Test Time Augmentation (TTA) technique, which utilizes the characteristics of the original, horizontal, and vertical flips, is used to gain precise boundary information and multi-scale image features. The performance of numerous state-of-the-art (SOTA) models is compared using several metrics such as accuracy, Dice Similarity Coefficients (DSC), Intersection Over Union (IoU), precision, and recall. The proposed model is tested on the Kvasir-SEG and CVC-ClinicDB datasets, demonstrating superior performance in handling unseen real-time data. It achieves the highest area coverage in the area under the Receiver Operating Characteristic (ROC-AUC) and area under Precision-Recall (AUC-PR) curves. The model exhibits excellent qualitative testing outcomes across different types of polyps, including more oversized, smaller, over-saturated, sessile, or flat polyps, within the same dataset and across different datasets. Our approach can significantly minimize the number of missed rating difficulties. Lastly, a graphical interface is developed for producing the mask in real-time. The findings of this study have potential applications in clinical colonoscopy procedures and can serve based on further research and development. MDPI 2023-09-07 /pmc/articles/PMC10534485/ /pubmed/37765780 http://dx.doi.org/10.3390/s23187724 Text en © 2023 by the authors. https://creativecommons.org/licenses/by/4.0/Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (https://creativecommons.org/licenses/by/4.0/).
spellingShingle Article
Ahamed, Md. Faysal
Syfullah, Md. Khalid
Sarkar, Ovi
Islam, Md. Tohidul
Nahiduzzaman, Md.
Islam, Md. Rabiul
Khandakar, Amith
Ayari, Mohamed Arselene
Chowdhury, Muhammad E. H.
IRv2-Net: A Deep Learning Framework for Enhanced Polyp Segmentation Performance Integrating InceptionResNetV2 and UNet Architecture with Test Time Augmentation Techniques
title IRv2-Net: A Deep Learning Framework for Enhanced Polyp Segmentation Performance Integrating InceptionResNetV2 and UNet Architecture with Test Time Augmentation Techniques
title_full IRv2-Net: A Deep Learning Framework for Enhanced Polyp Segmentation Performance Integrating InceptionResNetV2 and UNet Architecture with Test Time Augmentation Techniques
title_fullStr IRv2-Net: A Deep Learning Framework for Enhanced Polyp Segmentation Performance Integrating InceptionResNetV2 and UNet Architecture with Test Time Augmentation Techniques
title_full_unstemmed IRv2-Net: A Deep Learning Framework for Enhanced Polyp Segmentation Performance Integrating InceptionResNetV2 and UNet Architecture with Test Time Augmentation Techniques
title_short IRv2-Net: A Deep Learning Framework for Enhanced Polyp Segmentation Performance Integrating InceptionResNetV2 and UNet Architecture with Test Time Augmentation Techniques
title_sort irv2-net: a deep learning framework for enhanced polyp segmentation performance integrating inceptionresnetv2 and unet architecture with test time augmentation techniques
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10534485/
https://www.ncbi.nlm.nih.gov/pubmed/37765780
http://dx.doi.org/10.3390/s23187724
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