Cargando…

Interaction of Vanadium Complexes with Proteins: Revisiting the Reported Structures in the Protein Data Bank (PDB) since 2015

The structural determination and characterization of molecules, namely proteins and enzymes, is crucial to gaining a better understanding of their role in different chemical and biological processes. The continuous technical developments in the experimental and computational resources of X-ray diffr...

Descripción completa

Detalles Bibliográficos
Autores principales:	Santos, Marino F. A., Pessoa, João Costa
Formato:	Online Artículo Texto
Lenguaje:	English
Publicado:	MDPI 2023
Materias:	Review
Acceso en línea:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10536487/ https://www.ncbi.nlm.nih.gov/pubmed/37764313 http://dx.doi.org/10.3390/molecules28186538

Ejemplares similares

The worldwide Protein Data Bank (wwPDB): ensuring a single, uniform archive of PDB data
por: Berman, Helen, et al.
Publicado: (2007)

PDB_TM: selection and membrane localization of transmembrane proteins in the protein data bank
por: Tusnády, Gábor E., et al.
Publicado: (2005)

Accurate Representation of Protein-Ligand Structural Diversity in the Protein Data Bank (PDB)
por: Shinada, Nicolas K., et al.
Publicado: (2020)

ccPDB: compilation and creation of data sets from Protein Data Bank
por: Singh, Harinder, et al.
Publicado: (2012)

PDB-Explorer: a web-based interactive map of the protein data bank in shape space
por: Jin, Xian, et al.
Publicado: (2015)

Worldwide Protein Data Bank (wwPDB): A virtual treasure for research in biotechnology
por: BEHZADI, PAYAM, et al.
Publicado: (2021)

RCSB Protein Data Bank: improved annotation, search and visualization of membrane protein structures archived in the PDB
por: Bittrich, Sebastian, et al.
Publicado: (2021)

Proteins of Unknown Function in the Protein Data Bank (PDB): An Inventory of True Uncharacterized Proteins and Computational Tools for Their Analysis
por: Nadzirin, Nurul, et al.
Publicado: (2012)

hPDB – Haskell library for processing atomic biomolecular structures in protein data bank format
por: Gajda, Michał Jan
Publicado: (2013)

ExSer: A standalone tool to mine protein data bank (PDB) for secondary structural elements
por: Vignesh, Dhandapani, et al.
Publicado: (2010)

ccPDB 2.0: an updated version of datasets created and compiled from Protein Data Bank
por: Agrawal, Piyush, et al.
Publicado: (2019)

RCSB PDB Mobile: iOS and Android mobile apps to provide data access and visualization to the RCSB Protein Data Bank
por: Quinn, Gregory B., et al.
Publicado: (2015)

BioMagResBank (BMRB) as a partner in the Worldwide Protein Data Bank (wwPDB): new policies affecting biomolecular NMR depositions
por: Markley, John L., et al.
Publicado: (2008)

soaPDB: a web application for searching the Protein Data Bank, organizing results, and receiving automatic email alerts
por: Lesburg, Charles A., et al.
Publicado: (2008)

RCSB Protein Data Bank: Architectural Advances Towards Integrated Searching and Efficient Access to Macromolecular Structure Data from the PDB Archive
por: Rose, Yana, et al.
Publicado: (2021)

Vanadium compounds in medicine
por: Pessoa, Joao Costa, et al.
Publicado: (2015)

A systematic analysis of atomic protein–ligand interactions in the PDB
por: Ferreira de Freitas, Renato, et al.
Publicado: (2017)

NNvPDB: Neural Network based Protein Secondary Structure Prediction with PDB Validation
por: Sakthivel, Seethalakshmi, et al.
Publicado: (2015)

pdb-care (PDB CArbohydrate REsidue check): a program to support annotation of complex carbohydrate structures in PDB files
por: Lütteke, Thomas, et al.
Publicado: (2004)

Arabidopsis nucleolar protein database (AtNoPDB)
por: Brown, John W. S., et al.
Publicado: (2005)

Hydrogen Bonds with Fluorine in Ligand–Protein Complexes-the PDB Analysis and Energy Calculations
por: Pietruś, Wojciech, et al.
Publicado: (2022)

PDB‐tools web: A user‐friendly interface for the manipulation of PDB files
por: Jiménez‐García, Brian, et al.
Publicado: (2020)

Sequence-similar, structure-dissimilar protein pairs in the PDB
por: Kosloff, Mickey, et al.
Publicado: (2008)

RCSB Protein Data Bank (RCSB.org): delivery of experimentally-determined PDB structures alongside one million computed structure models of proteins from artificial intelligence/machine learning
por: Burley, Stephen K, et al.
Publicado: (2022)

A PDB-wide, evolution-based assessment of protein–protein interfaces
por: Baskaran, Kumaran, et al.
Publicado: (2014)

The PDB and the ribosome
por: Moore, Peter B.
Publicado: (2021)

Seeing the PDB
por: Richardson, Jane S., et al.
Publicado: (2021)

PDB_REDO: automated re-refinement of X-ray structure models in the PDB
por: Joosten, Robbie P., et al.
Publicado: (2009)

AffinDB: a freely accessible database of affinities for protein–ligand complexes from the PDB
por: Block, Peter, et al.
Publicado: (2006)

Pre-calculated protein structure alignments at the RCSB PDB website
por: Prlić, Andreas, et al.
Publicado: (2010)

Drug Promiscuity in PDB: Protein Binding Site Similarity Is Key
por: Haupt, V. Joachim, et al.
Publicado: (2013)

PDB2CD visualises dynamics within protein structures
por: Janes, Robert W.
Publicado: (2017)

The PDB and protein homeostasis: From chaperones to degradation and disaggregase machines
por: Saibil, Helen R.
Publicado: (2021)

Protein data bank
por: Parasuraman, S.
Publicado: (2012)

PiSite: a database of protein interaction sites using multiple binding states in the PDB
por: Higurashi, Miho, et al.
Publicado: (2009)

Mining anion–aromatic interactions in the Protein Data Bank
por: Kuzniak-Glanowska, Emilia, et al.
Publicado: (2022)

pdbFun: mass selection and fast comparison of annotated PDB residues
por: Ausiello, Gabriele, et al.
Publicado: (2005)

PDB_Amyloid: an extended live amyloid structure list from the PDB
por: Takács, Kristóf, et al.
Publicado: (2018)

The Vanadium Advantage: Flow Batteries Put Wind Energy in the Bank
por: Holzman, David C.
Publicado: (2007)

JET2 Viewer: a database of predicted multiple, possibly overlapping, protein–protein interaction sites for PDB structures
por: Ripoche, Hugues, et al.
Publicado: (2017)

Cannot write session to /tmp/vufind_sessions/sess_p215bjljdsu88cobftd8fg504g