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Automatic echocardiographic anomalies interpretation using a stacked residual-dense network model
Echocardiographic interpretation during the prenatal or postnatal period is important for diagnosing cardiac septal abnormalities. However, manual interpretation can be time consuming and subject to human error. Automatic segmentation of echocardiogram can support cardiologists in making an initial...
Autores principales: | , , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
BioMed Central
2023
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10536702/ https://www.ncbi.nlm.nih.gov/pubmed/37759158 http://dx.doi.org/10.1186/s12859-023-05493-9 |
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author | Nurmaini, Siti Sapitri, Ade Iriani Tutuko, Bambang Rachmatullah, Muhammad Naufal Rini, Dian Palupi Darmawahyuni, Annisa Firdaus, Firdaus Mandala, Satria Nova, Ria Bernolian, Nuswil |
author_facet | Nurmaini, Siti Sapitri, Ade Iriani Tutuko, Bambang Rachmatullah, Muhammad Naufal Rini, Dian Palupi Darmawahyuni, Annisa Firdaus, Firdaus Mandala, Satria Nova, Ria Bernolian, Nuswil |
author_sort | Nurmaini, Siti |
collection | PubMed |
description | Echocardiographic interpretation during the prenatal or postnatal period is important for diagnosing cardiac septal abnormalities. However, manual interpretation can be time consuming and subject to human error. Automatic segmentation of echocardiogram can support cardiologists in making an initial interpretation. However, such a process does not always provide straightforward information to make a complete interpretation. The segmentation process only identifies the region of cardiac septal abnormality, whereas complete interpretation should determine based on the position of defect. In this study, we proposed a stacked residual-dense network model to segment the entire region of cardiac and classifying their defect positions to generate automatic echocardiographic interpretation. We proposed the generalization model with incorporated two modalities: prenatal and postnatal echocardiography. To further evaluate the effectiveness of our model, its performance was verified by five cardiologists. We develop a pipeline process using 1345 echocardiograms for training data and 181 echocardiograms for unseen data from prospective patients acquired during standard clinical practice at Muhammad Hoesin General Hospital in Indonesia. As a result, the proposed model produced of 58.17% intersection over union (IoU), 75.75% dice similarity coefficient (DSC), and 76.36% mean average precision (mAP) for the validation data. Using unseen data, we achieved 42.39% IoU, 55.72% DSC, and 51.04% mAP. Further, the classification of defect positions using unseen data had approximately 92.27% accuracy, 94.33% specificity, and 92.05% sensitivity. Finally, our proposed model is validated with human expert with varying Kappa value. On average, these results hold promise of increasing suitability in clinical practice as a supporting diagnostic tool for establishing the diagnosis. |
format | Online Article Text |
id | pubmed-10536702 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2023 |
publisher | BioMed Central |
record_format | MEDLINE/PubMed |
spelling | pubmed-105367022023-09-29 Automatic echocardiographic anomalies interpretation using a stacked residual-dense network model Nurmaini, Siti Sapitri, Ade Iriani Tutuko, Bambang Rachmatullah, Muhammad Naufal Rini, Dian Palupi Darmawahyuni, Annisa Firdaus, Firdaus Mandala, Satria Nova, Ria Bernolian, Nuswil BMC Bioinformatics Research Echocardiographic interpretation during the prenatal or postnatal period is important for diagnosing cardiac septal abnormalities. However, manual interpretation can be time consuming and subject to human error. Automatic segmentation of echocardiogram can support cardiologists in making an initial interpretation. However, such a process does not always provide straightforward information to make a complete interpretation. The segmentation process only identifies the region of cardiac septal abnormality, whereas complete interpretation should determine based on the position of defect. In this study, we proposed a stacked residual-dense network model to segment the entire region of cardiac and classifying their defect positions to generate automatic echocardiographic interpretation. We proposed the generalization model with incorporated two modalities: prenatal and postnatal echocardiography. To further evaluate the effectiveness of our model, its performance was verified by five cardiologists. We develop a pipeline process using 1345 echocardiograms for training data and 181 echocardiograms for unseen data from prospective patients acquired during standard clinical practice at Muhammad Hoesin General Hospital in Indonesia. As a result, the proposed model produced of 58.17% intersection over union (IoU), 75.75% dice similarity coefficient (DSC), and 76.36% mean average precision (mAP) for the validation data. Using unseen data, we achieved 42.39% IoU, 55.72% DSC, and 51.04% mAP. Further, the classification of defect positions using unseen data had approximately 92.27% accuracy, 94.33% specificity, and 92.05% sensitivity. Finally, our proposed model is validated with human expert with varying Kappa value. On average, these results hold promise of increasing suitability in clinical practice as a supporting diagnostic tool for establishing the diagnosis. BioMed Central 2023-09-27 /pmc/articles/PMC10536702/ /pubmed/37759158 http://dx.doi.org/10.1186/s12859-023-05493-9 Text en © The Author(s) 2023 https://creativecommons.org/licenses/by/4.0/Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) . The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/ (https://creativecommons.org/publicdomain/zero/1.0/) ) applies to the data made available in this article, unless otherwise stated in a credit line to the data. |
spellingShingle | Research Nurmaini, Siti Sapitri, Ade Iriani Tutuko, Bambang Rachmatullah, Muhammad Naufal Rini, Dian Palupi Darmawahyuni, Annisa Firdaus, Firdaus Mandala, Satria Nova, Ria Bernolian, Nuswil Automatic echocardiographic anomalies interpretation using a stacked residual-dense network model |
title | Automatic echocardiographic anomalies interpretation using a stacked residual-dense network model |
title_full | Automatic echocardiographic anomalies interpretation using a stacked residual-dense network model |
title_fullStr | Automatic echocardiographic anomalies interpretation using a stacked residual-dense network model |
title_full_unstemmed | Automatic echocardiographic anomalies interpretation using a stacked residual-dense network model |
title_short | Automatic echocardiographic anomalies interpretation using a stacked residual-dense network model |
title_sort | automatic echocardiographic anomalies interpretation using a stacked residual-dense network model |
topic | Research |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10536702/ https://www.ncbi.nlm.nih.gov/pubmed/37759158 http://dx.doi.org/10.1186/s12859-023-05493-9 |
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