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EBV-Associated Hub Genes as Potential Biomarkers for Predicting the Prognosis of Nasopharyngeal Carcinoma
This study aimed to develop a model using Epstein–Barr virus (EBV)-associated hub genes in order to predict the prognosis of nasopharyngeal carcinoma (NPC). Differential expression analysis, univariate regression analysis, and machine learning were performed in three microarray datasets (GSE2371, GS...
Autores principales: | , , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
MDPI
2023
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10537168/ https://www.ncbi.nlm.nih.gov/pubmed/37766321 http://dx.doi.org/10.3390/v15091915 |
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author | Ding, Tengteng Zhang, Yuanbin Ren, Zhixuan Cong, Ying Long, Jingyi Peng, Manli Faleti, Oluwasijibomi Damola Yang, Yinggui Li, Xin Lyu, Xiaoming |
author_facet | Ding, Tengteng Zhang, Yuanbin Ren, Zhixuan Cong, Ying Long, Jingyi Peng, Manli Faleti, Oluwasijibomi Damola Yang, Yinggui Li, Xin Lyu, Xiaoming |
author_sort | Ding, Tengteng |
collection | PubMed |
description | This study aimed to develop a model using Epstein–Barr virus (EBV)-associated hub genes in order to predict the prognosis of nasopharyngeal carcinoma (NPC). Differential expression analysis, univariate regression analysis, and machine learning were performed in three microarray datasets (GSE2371, GSE12452, and GSE102349) collected from the GEO database. Three hundred and sixty-six EBV-DEGs were identified, 25 of which were found to be significantly associated with NPC prognosis. These 25 genes were used to classify NPC into two subtypes, and six genes (C16orf54, CD27, CD53, CRIP1, RARRES3, and TBC1D10C) were found to be hub genes in NPC related to immune infiltration and cell cycle regulation. It was shown that these genes could be used to predict the prognosis of NPC, with functions related to tumor proliferation and immune infiltration, making them potential therapeutic targets. The findings of this study could aid in the development of screening and prognostic methods for NPC based on EBV-related features. |
format | Online Article Text |
id | pubmed-10537168 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2023 |
publisher | MDPI |
record_format | MEDLINE/PubMed |
spelling | pubmed-105371682023-09-29 EBV-Associated Hub Genes as Potential Biomarkers for Predicting the Prognosis of Nasopharyngeal Carcinoma Ding, Tengteng Zhang, Yuanbin Ren, Zhixuan Cong, Ying Long, Jingyi Peng, Manli Faleti, Oluwasijibomi Damola Yang, Yinggui Li, Xin Lyu, Xiaoming Viruses Article This study aimed to develop a model using Epstein–Barr virus (EBV)-associated hub genes in order to predict the prognosis of nasopharyngeal carcinoma (NPC). Differential expression analysis, univariate regression analysis, and machine learning were performed in three microarray datasets (GSE2371, GSE12452, and GSE102349) collected from the GEO database. Three hundred and sixty-six EBV-DEGs were identified, 25 of which were found to be significantly associated with NPC prognosis. These 25 genes were used to classify NPC into two subtypes, and six genes (C16orf54, CD27, CD53, CRIP1, RARRES3, and TBC1D10C) were found to be hub genes in NPC related to immune infiltration and cell cycle regulation. It was shown that these genes could be used to predict the prognosis of NPC, with functions related to tumor proliferation and immune infiltration, making them potential therapeutic targets. The findings of this study could aid in the development of screening and prognostic methods for NPC based on EBV-related features. MDPI 2023-09-12 /pmc/articles/PMC10537168/ /pubmed/37766321 http://dx.doi.org/10.3390/v15091915 Text en © 2023 by the authors. https://creativecommons.org/licenses/by/4.0/Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (https://creativecommons.org/licenses/by/4.0/). |
spellingShingle | Article Ding, Tengteng Zhang, Yuanbin Ren, Zhixuan Cong, Ying Long, Jingyi Peng, Manli Faleti, Oluwasijibomi Damola Yang, Yinggui Li, Xin Lyu, Xiaoming EBV-Associated Hub Genes as Potential Biomarkers for Predicting the Prognosis of Nasopharyngeal Carcinoma |
title | EBV-Associated Hub Genes as Potential Biomarkers for Predicting the Prognosis of Nasopharyngeal Carcinoma |
title_full | EBV-Associated Hub Genes as Potential Biomarkers for Predicting the Prognosis of Nasopharyngeal Carcinoma |
title_fullStr | EBV-Associated Hub Genes as Potential Biomarkers for Predicting the Prognosis of Nasopharyngeal Carcinoma |
title_full_unstemmed | EBV-Associated Hub Genes as Potential Biomarkers for Predicting the Prognosis of Nasopharyngeal Carcinoma |
title_short | EBV-Associated Hub Genes as Potential Biomarkers for Predicting the Prognosis of Nasopharyngeal Carcinoma |
title_sort | ebv-associated hub genes as potential biomarkers for predicting the prognosis of nasopharyngeal carcinoma |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10537168/ https://www.ncbi.nlm.nih.gov/pubmed/37766321 http://dx.doi.org/10.3390/v15091915 |
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