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Segmentation and Phenotype Calculation of Rapeseed Pods Based on YOLO v8 and Mask R-Convolution Neural Networks

Rapeseed is a significant oil crop, and the size and length of its pods affect its productivity. However, manually counting the number of rapeseed pods and measuring the length, width, and area of the pod takes time and effort, especially when there are hundreds of rapeseed resources to be assessed....

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Detalles Bibliográficos
Autores principales: Wang, Nan, Liu, Hongbo, Li, Yicheng, Zhou, Weijun, Ding, Mingquan
Formato: Online Artículo Texto
Lenguaje:English
Publicado: MDPI 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10537308/
https://www.ncbi.nlm.nih.gov/pubmed/37765490
http://dx.doi.org/10.3390/plants12183328
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author Wang, Nan
Liu, Hongbo
Li, Yicheng
Zhou, Weijun
Ding, Mingquan
author_facet Wang, Nan
Liu, Hongbo
Li, Yicheng
Zhou, Weijun
Ding, Mingquan
author_sort Wang, Nan
collection PubMed
description Rapeseed is a significant oil crop, and the size and length of its pods affect its productivity. However, manually counting the number of rapeseed pods and measuring the length, width, and area of the pod takes time and effort, especially when there are hundreds of rapeseed resources to be assessed. This work created two state-of-the-art deep learning-based methods to identify rapeseed pods and related pod attributes, which are then implemented in rapeseed pots to improve the accuracy of the rapeseed yield estimate. One of these methods is YOLO v8, and the other is the two-stage model Mask R-CNN based on the framework Detectron2. The YOLO v8n model and the Mask R-CNN model with a Resnet101 backbone in Detectron2 both achieve precision rates exceeding 90%. The recognition results demonstrated that both models perform well when graphic images of rapeseed pods are segmented. In light of this, we developed a coin-based approach for estimating the size of rapeseed pods and tested it on a test dataset made up of nine different species of Brassica napus and one of Brassica campestris L. The correlation coefficients between manual measurement and machine vision measurement of length and width were calculated using statistical methods. The length regression coefficient of both methods was 0.991, and the width regression coefficient was 0.989. In conclusion, for the first time, we utilized deep learning techniques to identify the characteristics of rapeseed pods while concurrently establishing a dataset for rapeseed pods. Our suggested approaches were successful in segmenting and counting rapeseed pods precisely. Our approach offers breeders an effective strategy for digitally analyzing phenotypes and automating the identification and screening process, not only in rapeseed germplasm resources but also in leguminous plants, like soybeans that possess pods.
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spelling pubmed-105373082023-09-29 Segmentation and Phenotype Calculation of Rapeseed Pods Based on YOLO v8 and Mask R-Convolution Neural Networks Wang, Nan Liu, Hongbo Li, Yicheng Zhou, Weijun Ding, Mingquan Plants (Basel) Article Rapeseed is a significant oil crop, and the size and length of its pods affect its productivity. However, manually counting the number of rapeseed pods and measuring the length, width, and area of the pod takes time and effort, especially when there are hundreds of rapeseed resources to be assessed. This work created two state-of-the-art deep learning-based methods to identify rapeseed pods and related pod attributes, which are then implemented in rapeseed pots to improve the accuracy of the rapeseed yield estimate. One of these methods is YOLO v8, and the other is the two-stage model Mask R-CNN based on the framework Detectron2. The YOLO v8n model and the Mask R-CNN model with a Resnet101 backbone in Detectron2 both achieve precision rates exceeding 90%. The recognition results demonstrated that both models perform well when graphic images of rapeseed pods are segmented. In light of this, we developed a coin-based approach for estimating the size of rapeseed pods and tested it on a test dataset made up of nine different species of Brassica napus and one of Brassica campestris L. The correlation coefficients between manual measurement and machine vision measurement of length and width were calculated using statistical methods. The length regression coefficient of both methods was 0.991, and the width regression coefficient was 0.989. In conclusion, for the first time, we utilized deep learning techniques to identify the characteristics of rapeseed pods while concurrently establishing a dataset for rapeseed pods. Our suggested approaches were successful in segmenting and counting rapeseed pods precisely. Our approach offers breeders an effective strategy for digitally analyzing phenotypes and automating the identification and screening process, not only in rapeseed germplasm resources but also in leguminous plants, like soybeans that possess pods. MDPI 2023-09-20 /pmc/articles/PMC10537308/ /pubmed/37765490 http://dx.doi.org/10.3390/plants12183328 Text en © 2023 by the authors. https://creativecommons.org/licenses/by/4.0/Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (https://creativecommons.org/licenses/by/4.0/).
spellingShingle Article
Wang, Nan
Liu, Hongbo
Li, Yicheng
Zhou, Weijun
Ding, Mingquan
Segmentation and Phenotype Calculation of Rapeseed Pods Based on YOLO v8 and Mask R-Convolution Neural Networks
title Segmentation and Phenotype Calculation of Rapeseed Pods Based on YOLO v8 and Mask R-Convolution Neural Networks
title_full Segmentation and Phenotype Calculation of Rapeseed Pods Based on YOLO v8 and Mask R-Convolution Neural Networks
title_fullStr Segmentation and Phenotype Calculation of Rapeseed Pods Based on YOLO v8 and Mask R-Convolution Neural Networks
title_full_unstemmed Segmentation and Phenotype Calculation of Rapeseed Pods Based on YOLO v8 and Mask R-Convolution Neural Networks
title_short Segmentation and Phenotype Calculation of Rapeseed Pods Based on YOLO v8 and Mask R-Convolution Neural Networks
title_sort segmentation and phenotype calculation of rapeseed pods based on yolo v8 and mask r-convolution neural networks
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10537308/
https://www.ncbi.nlm.nih.gov/pubmed/37765490
http://dx.doi.org/10.3390/plants12183328
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