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Establishment and validation of an immune infiltration predictive model for ovarian cancer

BACKGROUND: The most prevalent mutation in ovarian cancer is the TP53 mutation, which impacts the development and prognosis of the disease. We looked at how the TP53 mutation associates the immunophenotype of ovarian cancer and the prognosis of the disease. METHODS: We investigated the state of TP53...

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Autores principales: Song, Zhenxia, Zhang, Jingwen, Sun, Yue, Jiang, Zhongmin, Liu, Xiaoning
Formato: Online Artículo Texto
Lenguaje:English
Publicado: BioMed Central 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10538244/
https://www.ncbi.nlm.nih.gov/pubmed/37759229
http://dx.doi.org/10.1186/s12920-023-01657-x
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author Song, Zhenxia
Zhang, Jingwen
Sun, Yue
Jiang, Zhongmin
Liu, Xiaoning
author_facet Song, Zhenxia
Zhang, Jingwen
Sun, Yue
Jiang, Zhongmin
Liu, Xiaoning
author_sort Song, Zhenxia
collection PubMed
description BACKGROUND: The most prevalent mutation in ovarian cancer is the TP53 mutation, which impacts the development and prognosis of the disease. We looked at how the TP53 mutation associates the immunophenotype of ovarian cancer and the prognosis of the disease. METHODS: We investigated the state of TP53 mutations and expression profiles in culturally diverse groups and datasets and developed an immune infiltration predictive model relying on immune-associated genes differently expressed between TP53 WT and TP53 MUT ovarian cancer cases. We aimed to construct an immune infiltration predictive model (IPM) to enhance the prognosis of ovarian cancer and investigate the impact of the IPM on the immunological microenvironment. RESULTS: TP53 mutagenesis affected the expression of seventy-seven immune response-associated genes. An IPM was implemented and evaluated on ovarian cancer patients to distinguish individuals with low- and high-IPM subgroups of poor survival. For diagnostic and therapeutic use, a nomogram is thus created. According to pathway enrichment analysis, the pathways of the human immune response and immune function abnormalities were the most associated functions and pathways with the IPM genes. Furthermore, patients in the high-risk group showed low proportions of macrophages M1, activated NK cells, CD8(+) T cells, and higher CTLA-4, PD-1, PD-L1, and TIM-3 than patients in the low-risk group. CONCLUSIONS: The IPM model may identify high-risk patients and integrate other clinical parameters to predict their overall survival, suggesting it is a potential methodology for optimizing ovarian cancer prognosis. SUPPLEMENTARY INFORMATION: The online version contains supplementary material available at 10.1186/s12920-023-01657-x.
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spelling pubmed-105382442023-09-29 Establishment and validation of an immune infiltration predictive model for ovarian cancer Song, Zhenxia Zhang, Jingwen Sun, Yue Jiang, Zhongmin Liu, Xiaoning BMC Med Genomics Research BACKGROUND: The most prevalent mutation in ovarian cancer is the TP53 mutation, which impacts the development and prognosis of the disease. We looked at how the TP53 mutation associates the immunophenotype of ovarian cancer and the prognosis of the disease. METHODS: We investigated the state of TP53 mutations and expression profiles in culturally diverse groups and datasets and developed an immune infiltration predictive model relying on immune-associated genes differently expressed between TP53 WT and TP53 MUT ovarian cancer cases. We aimed to construct an immune infiltration predictive model (IPM) to enhance the prognosis of ovarian cancer and investigate the impact of the IPM on the immunological microenvironment. RESULTS: TP53 mutagenesis affected the expression of seventy-seven immune response-associated genes. An IPM was implemented and evaluated on ovarian cancer patients to distinguish individuals with low- and high-IPM subgroups of poor survival. For diagnostic and therapeutic use, a nomogram is thus created. According to pathway enrichment analysis, the pathways of the human immune response and immune function abnormalities were the most associated functions and pathways with the IPM genes. Furthermore, patients in the high-risk group showed low proportions of macrophages M1, activated NK cells, CD8(+) T cells, and higher CTLA-4, PD-1, PD-L1, and TIM-3 than patients in the low-risk group. CONCLUSIONS: The IPM model may identify high-risk patients and integrate other clinical parameters to predict their overall survival, suggesting it is a potential methodology for optimizing ovarian cancer prognosis. SUPPLEMENTARY INFORMATION: The online version contains supplementary material available at 10.1186/s12920-023-01657-x. BioMed Central 2023-09-28 /pmc/articles/PMC10538244/ /pubmed/37759229 http://dx.doi.org/10.1186/s12920-023-01657-x Text en © The Author(s) 2023 https://creativecommons.org/licenses/by/4.0/Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) . The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/ (https://creativecommons.org/publicdomain/zero/1.0/) ) applies to the data made available in this article, unless otherwise stated in a credit line to the data.
spellingShingle Research
Song, Zhenxia
Zhang, Jingwen
Sun, Yue
Jiang, Zhongmin
Liu, Xiaoning
Establishment and validation of an immune infiltration predictive model for ovarian cancer
title Establishment and validation of an immune infiltration predictive model for ovarian cancer
title_full Establishment and validation of an immune infiltration predictive model for ovarian cancer
title_fullStr Establishment and validation of an immune infiltration predictive model for ovarian cancer
title_full_unstemmed Establishment and validation of an immune infiltration predictive model for ovarian cancer
title_short Establishment and validation of an immune infiltration predictive model for ovarian cancer
title_sort establishment and validation of an immune infiltration predictive model for ovarian cancer
topic Research
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10538244/
https://www.ncbi.nlm.nih.gov/pubmed/37759229
http://dx.doi.org/10.1186/s12920-023-01657-x
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