Cargando…

Genome-wide analysis of the Pleurotus eryngii laccase gene (PeLac) family and functional identification of PeLac5

The laccase gene family encodes multiple isozymes that are crucial for the degradation of substrates and the regulation of developmental processes in fungi. Pleurotus eryngii is an important edible and medicinal fungus belonging to the Basidiomycota phylum and can grow on a variety of natural substr...

Descripción completa

Detalles Bibliográficos
Autores principales: Li, Zihao, Zhou, Yuanyuan, Xu, Congtao, Pan, Jinlong, Li, Haikang, Zhou, Yi, Zou, Yajie
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Springer Berlin Heidelberg 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10539258/
https://www.ncbi.nlm.nih.gov/pubmed/37768391
http://dx.doi.org/10.1186/s13568-023-01608-w
_version_ 1785113458964955136
author Li, Zihao
Zhou, Yuanyuan
Xu, Congtao
Pan, Jinlong
Li, Haikang
Zhou, Yi
Zou, Yajie
author_facet Li, Zihao
Zhou, Yuanyuan
Xu, Congtao
Pan, Jinlong
Li, Haikang
Zhou, Yi
Zou, Yajie
author_sort Li, Zihao
collection PubMed
description The laccase gene family encodes multiple isozymes that are crucial for the degradation of substrates and the regulation of developmental processes in fungi. Pleurotus eryngii is an important edible and medicinal fungus belonging to the Basidiomycota phylum and can grow on a variety of natural substrates. In the present study, genome-wide profiling of P. eryngii identified 10 genes encoding its laccase isoenzymes. Conservative sequence analysis demonstrated that all PeLacs possess classical laccase structural domains. Phylogenetic analysis yielded four major subgroups, the members of which are similar with respect to conserved gene organization, protein domain architecture, and consensus motifs. The 10 PeLacs formed three groups together with 12 PoLacs in Pleurotus ostreatus, indicating that they share a high level of evolutionary homology. Cis-responsive element analysis implied that PeLacs genes play a role in growth and development and lignocellulose degradation. Targeted overexpression of PeLac5 reduced the time to primordia formation and their development to fruiting bodies. Gene expression patterns in the presence of different lignocellulosic substrates indicate that three PeLacs genes (2, 4, and 9) are key to lignocellulose degradation. This work presents the first inventory of laccase genes in P. eryngii and preliminarily explores their functions, which may help to uncover the manner by which these proteins utilize substrates. SUPPLEMENTARY INFORMATION: The online version contains supplementary material available at 10.1186/s13568-023-01608-w.
format Online
Article
Text
id pubmed-10539258
institution National Center for Biotechnology Information
language English
publishDate 2023
publisher Springer Berlin Heidelberg
record_format MEDLINE/PubMed
spelling pubmed-105392582023-09-30 Genome-wide analysis of the Pleurotus eryngii laccase gene (PeLac) family and functional identification of PeLac5 Li, Zihao Zhou, Yuanyuan Xu, Congtao Pan, Jinlong Li, Haikang Zhou, Yi Zou, Yajie AMB Express Original Article The laccase gene family encodes multiple isozymes that are crucial for the degradation of substrates and the regulation of developmental processes in fungi. Pleurotus eryngii is an important edible and medicinal fungus belonging to the Basidiomycota phylum and can grow on a variety of natural substrates. In the present study, genome-wide profiling of P. eryngii identified 10 genes encoding its laccase isoenzymes. Conservative sequence analysis demonstrated that all PeLacs possess classical laccase structural domains. Phylogenetic analysis yielded four major subgroups, the members of which are similar with respect to conserved gene organization, protein domain architecture, and consensus motifs. The 10 PeLacs formed three groups together with 12 PoLacs in Pleurotus ostreatus, indicating that they share a high level of evolutionary homology. Cis-responsive element analysis implied that PeLacs genes play a role in growth and development and lignocellulose degradation. Targeted overexpression of PeLac5 reduced the time to primordia formation and their development to fruiting bodies. Gene expression patterns in the presence of different lignocellulosic substrates indicate that three PeLacs genes (2, 4, and 9) are key to lignocellulose degradation. This work presents the first inventory of laccase genes in P. eryngii and preliminarily explores their functions, which may help to uncover the manner by which these proteins utilize substrates. SUPPLEMENTARY INFORMATION: The online version contains supplementary material available at 10.1186/s13568-023-01608-w. Springer Berlin Heidelberg 2023-09-28 /pmc/articles/PMC10539258/ /pubmed/37768391 http://dx.doi.org/10.1186/s13568-023-01608-w Text en © The Author(s) 2023 https://creativecommons.org/licenses/by/4.0/Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) .
spellingShingle Original Article
Li, Zihao
Zhou, Yuanyuan
Xu, Congtao
Pan, Jinlong
Li, Haikang
Zhou, Yi
Zou, Yajie
Genome-wide analysis of the Pleurotus eryngii laccase gene (PeLac) family and functional identification of PeLac5
title Genome-wide analysis of the Pleurotus eryngii laccase gene (PeLac) family and functional identification of PeLac5
title_full Genome-wide analysis of the Pleurotus eryngii laccase gene (PeLac) family and functional identification of PeLac5
title_fullStr Genome-wide analysis of the Pleurotus eryngii laccase gene (PeLac) family and functional identification of PeLac5
title_full_unstemmed Genome-wide analysis of the Pleurotus eryngii laccase gene (PeLac) family and functional identification of PeLac5
title_short Genome-wide analysis of the Pleurotus eryngii laccase gene (PeLac) family and functional identification of PeLac5
title_sort genome-wide analysis of the pleurotus eryngii laccase gene (pelac) family and functional identification of pelac5
topic Original Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10539258/
https://www.ncbi.nlm.nih.gov/pubmed/37768391
http://dx.doi.org/10.1186/s13568-023-01608-w
work_keys_str_mv AT lizihao genomewideanalysisofthepleurotuseryngiilaccasegenepelacfamilyandfunctionalidentificationofpelac5
AT zhouyuanyuan genomewideanalysisofthepleurotuseryngiilaccasegenepelacfamilyandfunctionalidentificationofpelac5
AT xucongtao genomewideanalysisofthepleurotuseryngiilaccasegenepelacfamilyandfunctionalidentificationofpelac5
AT panjinlong genomewideanalysisofthepleurotuseryngiilaccasegenepelacfamilyandfunctionalidentificationofpelac5
AT lihaikang genomewideanalysisofthepleurotuseryngiilaccasegenepelacfamilyandfunctionalidentificationofpelac5
AT zhouyi genomewideanalysisofthepleurotuseryngiilaccasegenepelacfamilyandfunctionalidentificationofpelac5
AT zouyajie genomewideanalysisofthepleurotuseryngiilaccasegenepelacfamilyandfunctionalidentificationofpelac5