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Genome-wide analysis of the Pleurotus eryngii laccase gene (PeLac) family and functional identification of PeLac5
The laccase gene family encodes multiple isozymes that are crucial for the degradation of substrates and the regulation of developmental processes in fungi. Pleurotus eryngii is an important edible and medicinal fungus belonging to the Basidiomycota phylum and can grow on a variety of natural substr...
Autores principales: | , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
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Springer Berlin Heidelberg
2023
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10539258/ https://www.ncbi.nlm.nih.gov/pubmed/37768391 http://dx.doi.org/10.1186/s13568-023-01608-w |
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author | Li, Zihao Zhou, Yuanyuan Xu, Congtao Pan, Jinlong Li, Haikang Zhou, Yi Zou, Yajie |
author_facet | Li, Zihao Zhou, Yuanyuan Xu, Congtao Pan, Jinlong Li, Haikang Zhou, Yi Zou, Yajie |
author_sort | Li, Zihao |
collection | PubMed |
description | The laccase gene family encodes multiple isozymes that are crucial for the degradation of substrates and the regulation of developmental processes in fungi. Pleurotus eryngii is an important edible and medicinal fungus belonging to the Basidiomycota phylum and can grow on a variety of natural substrates. In the present study, genome-wide profiling of P. eryngii identified 10 genes encoding its laccase isoenzymes. Conservative sequence analysis demonstrated that all PeLacs possess classical laccase structural domains. Phylogenetic analysis yielded four major subgroups, the members of which are similar with respect to conserved gene organization, protein domain architecture, and consensus motifs. The 10 PeLacs formed three groups together with 12 PoLacs in Pleurotus ostreatus, indicating that they share a high level of evolutionary homology. Cis-responsive element analysis implied that PeLacs genes play a role in growth and development and lignocellulose degradation. Targeted overexpression of PeLac5 reduced the time to primordia formation and their development to fruiting bodies. Gene expression patterns in the presence of different lignocellulosic substrates indicate that three PeLacs genes (2, 4, and 9) are key to lignocellulose degradation. This work presents the first inventory of laccase genes in P. eryngii and preliminarily explores their functions, which may help to uncover the manner by which these proteins utilize substrates. SUPPLEMENTARY INFORMATION: The online version contains supplementary material available at 10.1186/s13568-023-01608-w. |
format | Online Article Text |
id | pubmed-10539258 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2023 |
publisher | Springer Berlin Heidelberg |
record_format | MEDLINE/PubMed |
spelling | pubmed-105392582023-09-30 Genome-wide analysis of the Pleurotus eryngii laccase gene (PeLac) family and functional identification of PeLac5 Li, Zihao Zhou, Yuanyuan Xu, Congtao Pan, Jinlong Li, Haikang Zhou, Yi Zou, Yajie AMB Express Original Article The laccase gene family encodes multiple isozymes that are crucial for the degradation of substrates and the regulation of developmental processes in fungi. Pleurotus eryngii is an important edible and medicinal fungus belonging to the Basidiomycota phylum and can grow on a variety of natural substrates. In the present study, genome-wide profiling of P. eryngii identified 10 genes encoding its laccase isoenzymes. Conservative sequence analysis demonstrated that all PeLacs possess classical laccase structural domains. Phylogenetic analysis yielded four major subgroups, the members of which are similar with respect to conserved gene organization, protein domain architecture, and consensus motifs. The 10 PeLacs formed three groups together with 12 PoLacs in Pleurotus ostreatus, indicating that they share a high level of evolutionary homology. Cis-responsive element analysis implied that PeLacs genes play a role in growth and development and lignocellulose degradation. Targeted overexpression of PeLac5 reduced the time to primordia formation and their development to fruiting bodies. Gene expression patterns in the presence of different lignocellulosic substrates indicate that three PeLacs genes (2, 4, and 9) are key to lignocellulose degradation. This work presents the first inventory of laccase genes in P. eryngii and preliminarily explores their functions, which may help to uncover the manner by which these proteins utilize substrates. SUPPLEMENTARY INFORMATION: The online version contains supplementary material available at 10.1186/s13568-023-01608-w. Springer Berlin Heidelberg 2023-09-28 /pmc/articles/PMC10539258/ /pubmed/37768391 http://dx.doi.org/10.1186/s13568-023-01608-w Text en © The Author(s) 2023 https://creativecommons.org/licenses/by/4.0/Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) . |
spellingShingle | Original Article Li, Zihao Zhou, Yuanyuan Xu, Congtao Pan, Jinlong Li, Haikang Zhou, Yi Zou, Yajie Genome-wide analysis of the Pleurotus eryngii laccase gene (PeLac) family and functional identification of PeLac5 |
title | Genome-wide analysis of the Pleurotus eryngii laccase gene (PeLac) family and functional identification of PeLac5 |
title_full | Genome-wide analysis of the Pleurotus eryngii laccase gene (PeLac) family and functional identification of PeLac5 |
title_fullStr | Genome-wide analysis of the Pleurotus eryngii laccase gene (PeLac) family and functional identification of PeLac5 |
title_full_unstemmed | Genome-wide analysis of the Pleurotus eryngii laccase gene (PeLac) family and functional identification of PeLac5 |
title_short | Genome-wide analysis of the Pleurotus eryngii laccase gene (PeLac) family and functional identification of PeLac5 |
title_sort | genome-wide analysis of the pleurotus eryngii laccase gene (pelac) family and functional identification of pelac5 |
topic | Original Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10539258/ https://www.ncbi.nlm.nih.gov/pubmed/37768391 http://dx.doi.org/10.1186/s13568-023-01608-w |
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