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A chromosome-level reference genome of an aromatic medicinal plant Adenosma buchneroides

Adenosma buchneroides Bonati, belonging to the genus Adenosum (Plantaginaceae), is an aromatic medicinal plant and utilized in traditional Chinese medicine. It has been widely used as plant-based repellents to prevent vector-borne diseases. However, the lack of a reference genome limits the study of...

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Autores principales: Huang, Hui, Wang, Chen, Pei, Shengji, Wang, Yuhua
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Nature Publishing Group UK 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10539347/
https://www.ncbi.nlm.nih.gov/pubmed/37770464
http://dx.doi.org/10.1038/s41597-023-02571-8
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author Huang, Hui
Wang, Chen
Pei, Shengji
Wang, Yuhua
author_facet Huang, Hui
Wang, Chen
Pei, Shengji
Wang, Yuhua
author_sort Huang, Hui
collection PubMed
description Adenosma buchneroides Bonati, belonging to the genus Adenosum (Plantaginaceae), is an aromatic medicinal plant and utilized in traditional Chinese medicine. It has been widely used as plant-based repellents to prevent vector-borne diseases. However, the lack of a reference genome limits the study of conservation management and molecular biology of A. buchneroides. Here, we generated a chromosome-level de novo genome assembly of A. buchneroides which is a high-quality chromosome-scale assembly of aromatic medicinal plant in Plantaginaceae. The genome has a total length of 442.84 Mb with scaffold N50 of 27.98 Mb and 95.55% of the genome assigned to 14 chromosomes. BUSCO assessment yielded a completeness score of 97.2%. Furthermore, we predicted 24,367 protein-coding genes, and 95.79% of them was functionally annotated. The chromosome-scale genome of A. buchneroides will be a significant resource for understanding the genetic basis and evolution of active components biosynthesis, which will facilitate further study and exploit of A. buchneroides.
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spelling pubmed-105393472023-09-30 A chromosome-level reference genome of an aromatic medicinal plant Adenosma buchneroides Huang, Hui Wang, Chen Pei, Shengji Wang, Yuhua Sci Data Data Descriptor Adenosma buchneroides Bonati, belonging to the genus Adenosum (Plantaginaceae), is an aromatic medicinal plant and utilized in traditional Chinese medicine. It has been widely used as plant-based repellents to prevent vector-borne diseases. However, the lack of a reference genome limits the study of conservation management and molecular biology of A. buchneroides. Here, we generated a chromosome-level de novo genome assembly of A. buchneroides which is a high-quality chromosome-scale assembly of aromatic medicinal plant in Plantaginaceae. The genome has a total length of 442.84 Mb with scaffold N50 of 27.98 Mb and 95.55% of the genome assigned to 14 chromosomes. BUSCO assessment yielded a completeness score of 97.2%. Furthermore, we predicted 24,367 protein-coding genes, and 95.79% of them was functionally annotated. The chromosome-scale genome of A. buchneroides will be a significant resource for understanding the genetic basis and evolution of active components biosynthesis, which will facilitate further study and exploit of A. buchneroides. Nature Publishing Group UK 2023-09-28 /pmc/articles/PMC10539347/ /pubmed/37770464 http://dx.doi.org/10.1038/s41597-023-02571-8 Text en © The Author(s) 2023 https://creativecommons.org/licenses/by/4.0/Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) .
spellingShingle Data Descriptor
Huang, Hui
Wang, Chen
Pei, Shengji
Wang, Yuhua
A chromosome-level reference genome of an aromatic medicinal plant Adenosma buchneroides
title A chromosome-level reference genome of an aromatic medicinal plant Adenosma buchneroides
title_full A chromosome-level reference genome of an aromatic medicinal plant Adenosma buchneroides
title_fullStr A chromosome-level reference genome of an aromatic medicinal plant Adenosma buchneroides
title_full_unstemmed A chromosome-level reference genome of an aromatic medicinal plant Adenosma buchneroides
title_short A chromosome-level reference genome of an aromatic medicinal plant Adenosma buchneroides
title_sort chromosome-level reference genome of an aromatic medicinal plant adenosma buchneroides
topic Data Descriptor
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10539347/
https://www.ncbi.nlm.nih.gov/pubmed/37770464
http://dx.doi.org/10.1038/s41597-023-02571-8
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