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A chromosome-level reference genome of an aromatic medicinal plant Adenosma buchneroides
Adenosma buchneroides Bonati, belonging to the genus Adenosum (Plantaginaceae), is an aromatic medicinal plant and utilized in traditional Chinese medicine. It has been widely used as plant-based repellents to prevent vector-borne diseases. However, the lack of a reference genome limits the study of...
Autores principales: | , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Nature Publishing Group UK
2023
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10539347/ https://www.ncbi.nlm.nih.gov/pubmed/37770464 http://dx.doi.org/10.1038/s41597-023-02571-8 |
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author | Huang, Hui Wang, Chen Pei, Shengji Wang, Yuhua |
author_facet | Huang, Hui Wang, Chen Pei, Shengji Wang, Yuhua |
author_sort | Huang, Hui |
collection | PubMed |
description | Adenosma buchneroides Bonati, belonging to the genus Adenosum (Plantaginaceae), is an aromatic medicinal plant and utilized in traditional Chinese medicine. It has been widely used as plant-based repellents to prevent vector-borne diseases. However, the lack of a reference genome limits the study of conservation management and molecular biology of A. buchneroides. Here, we generated a chromosome-level de novo genome assembly of A. buchneroides which is a high-quality chromosome-scale assembly of aromatic medicinal plant in Plantaginaceae. The genome has a total length of 442.84 Mb with scaffold N50 of 27.98 Mb and 95.55% of the genome assigned to 14 chromosomes. BUSCO assessment yielded a completeness score of 97.2%. Furthermore, we predicted 24,367 protein-coding genes, and 95.79% of them was functionally annotated. The chromosome-scale genome of A. buchneroides will be a significant resource for understanding the genetic basis and evolution of active components biosynthesis, which will facilitate further study and exploit of A. buchneroides. |
format | Online Article Text |
id | pubmed-10539347 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2023 |
publisher | Nature Publishing Group UK |
record_format | MEDLINE/PubMed |
spelling | pubmed-105393472023-09-30 A chromosome-level reference genome of an aromatic medicinal plant Adenosma buchneroides Huang, Hui Wang, Chen Pei, Shengji Wang, Yuhua Sci Data Data Descriptor Adenosma buchneroides Bonati, belonging to the genus Adenosum (Plantaginaceae), is an aromatic medicinal plant and utilized in traditional Chinese medicine. It has been widely used as plant-based repellents to prevent vector-borne diseases. However, the lack of a reference genome limits the study of conservation management and molecular biology of A. buchneroides. Here, we generated a chromosome-level de novo genome assembly of A. buchneroides which is a high-quality chromosome-scale assembly of aromatic medicinal plant in Plantaginaceae. The genome has a total length of 442.84 Mb with scaffold N50 of 27.98 Mb and 95.55% of the genome assigned to 14 chromosomes. BUSCO assessment yielded a completeness score of 97.2%. Furthermore, we predicted 24,367 protein-coding genes, and 95.79% of them was functionally annotated. The chromosome-scale genome of A. buchneroides will be a significant resource for understanding the genetic basis and evolution of active components biosynthesis, which will facilitate further study and exploit of A. buchneroides. Nature Publishing Group UK 2023-09-28 /pmc/articles/PMC10539347/ /pubmed/37770464 http://dx.doi.org/10.1038/s41597-023-02571-8 Text en © The Author(s) 2023 https://creativecommons.org/licenses/by/4.0/Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) . |
spellingShingle | Data Descriptor Huang, Hui Wang, Chen Pei, Shengji Wang, Yuhua A chromosome-level reference genome of an aromatic medicinal plant Adenosma buchneroides |
title | A chromosome-level reference genome of an aromatic medicinal plant Adenosma buchneroides |
title_full | A chromosome-level reference genome of an aromatic medicinal plant Adenosma buchneroides |
title_fullStr | A chromosome-level reference genome of an aromatic medicinal plant Adenosma buchneroides |
title_full_unstemmed | A chromosome-level reference genome of an aromatic medicinal plant Adenosma buchneroides |
title_short | A chromosome-level reference genome of an aromatic medicinal plant Adenosma buchneroides |
title_sort | chromosome-level reference genome of an aromatic medicinal plant adenosma buchneroides |
topic | Data Descriptor |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10539347/ https://www.ncbi.nlm.nih.gov/pubmed/37770464 http://dx.doi.org/10.1038/s41597-023-02571-8 |
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