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Extending the applicability of P3D for structure determination of small molecules

The application of anisotropic nuclear magnetic resonance (NMR) parameters for the correct structural assignment of small molecules requires the use of partially ordered media. Previously we demonstrated that the use of P3D simulations using poly( [Formula: see text] -benzyl-L-glutamate) (PBLG) as a...

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Detalles Bibliográficos
Autores principales: Ibáñez de Opakua, Alain, Zweckstetter, Markus
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Copernicus GmbH 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10539764/
https://www.ncbi.nlm.nih.gov/pubmed/37904779
http://dx.doi.org/10.5194/mr-2-105-2021
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author Ibáñez de Opakua, Alain
Zweckstetter, Markus
author_facet Ibáñez de Opakua, Alain
Zweckstetter, Markus
author_sort Ibáñez de Opakua, Alain
collection PubMed
description The application of anisotropic nuclear magnetic resonance (NMR) parameters for the correct structural assignment of small molecules requires the use of partially ordered media. Previously we demonstrated that the use of P3D simulations using poly( [Formula: see text] -benzyl-L-glutamate) (PBLG) as an alignment medium allows for the determination of the correct diastereomer from extremely sparse NMR data. Through the analysis of the structural characteristics of small molecules in different alignment media, here we show that when steric or electrostatic factors dominate the alignment, P3D-PBLG retains its diastereomer discrimination power. We also demonstrate that P3D simulations can define the different conformations of a flexible small molecule from sparse NMR data.
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spelling pubmed-105397642023-10-30 Extending the applicability of P3D for structure determination of small molecules Ibáñez de Opakua, Alain Zweckstetter, Markus Magn Reson (Gott) Research Article The application of anisotropic nuclear magnetic resonance (NMR) parameters for the correct structural assignment of small molecules requires the use of partially ordered media. Previously we demonstrated that the use of P3D simulations using poly( [Formula: see text] -benzyl-L-glutamate) (PBLG) as an alignment medium allows for the determination of the correct diastereomer from extremely sparse NMR data. Through the analysis of the structural characteristics of small molecules in different alignment media, here we show that when steric or electrostatic factors dominate the alignment, P3D-PBLG retains its diastereomer discrimination power. We also demonstrate that P3D simulations can define the different conformations of a flexible small molecule from sparse NMR data. Copernicus GmbH 2021-04-08 /pmc/articles/PMC10539764/ /pubmed/37904779 http://dx.doi.org/10.5194/mr-2-105-2021 Text en Copyright: © 2021 Alain Ibáñez de Opakua and Markus Zweckstetter https://creativecommons.org/licenses/by/4.0/This work is licensed under the Creative Commons Attribution 4.0 International License. To view a copy of this licence, visit https://creativecommons.org/licenses/by/4.0/
spellingShingle Research Article
Ibáñez de Opakua, Alain
Zweckstetter, Markus
Extending the applicability of P3D for structure determination of small molecules
title Extending the applicability of P3D for structure determination of small molecules
title_full Extending the applicability of P3D for structure determination of small molecules
title_fullStr Extending the applicability of P3D for structure determination of small molecules
title_full_unstemmed Extending the applicability of P3D for structure determination of small molecules
title_short Extending the applicability of P3D for structure determination of small molecules
title_sort extending the applicability of p3d for structure determination of small molecules
topic Research Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10539764/
https://www.ncbi.nlm.nih.gov/pubmed/37904779
http://dx.doi.org/10.5194/mr-2-105-2021
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