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Extending the applicability of P3D for structure determination of small molecules
The application of anisotropic nuclear magnetic resonance (NMR) parameters for the correct structural assignment of small molecules requires the use of partially ordered media. Previously we demonstrated that the use of P3D simulations using poly( [Formula: see text] -benzyl-L-glutamate) (PBLG) as a...
Autores principales: | , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Copernicus GmbH
2021
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10539764/ https://www.ncbi.nlm.nih.gov/pubmed/37904779 http://dx.doi.org/10.5194/mr-2-105-2021 |
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author | Ibáñez de Opakua, Alain Zweckstetter, Markus |
author_facet | Ibáñez de Opakua, Alain Zweckstetter, Markus |
author_sort | Ibáñez de Opakua, Alain |
collection | PubMed |
description | The application of anisotropic nuclear magnetic resonance (NMR) parameters for the correct structural assignment of small molecules requires the use of partially ordered media. Previously we demonstrated that the use of P3D simulations using poly( [Formula: see text] -benzyl-L-glutamate) (PBLG) as an alignment medium allows for the determination of the correct diastereomer from extremely sparse NMR data. Through the analysis of the structural characteristics of small molecules in different alignment media, here we show that when steric or electrostatic factors dominate the alignment, P3D-PBLG retains its diastereomer discrimination power. We also demonstrate that P3D simulations can define the different conformations of a flexible small molecule from sparse NMR data. |
format | Online Article Text |
id | pubmed-10539764 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2021 |
publisher | Copernicus GmbH |
record_format | MEDLINE/PubMed |
spelling | pubmed-105397642023-10-30 Extending the applicability of P3D for structure determination of small molecules Ibáñez de Opakua, Alain Zweckstetter, Markus Magn Reson (Gott) Research Article The application of anisotropic nuclear magnetic resonance (NMR) parameters for the correct structural assignment of small molecules requires the use of partially ordered media. Previously we demonstrated that the use of P3D simulations using poly( [Formula: see text] -benzyl-L-glutamate) (PBLG) as an alignment medium allows for the determination of the correct diastereomer from extremely sparse NMR data. Through the analysis of the structural characteristics of small molecules in different alignment media, here we show that when steric or electrostatic factors dominate the alignment, P3D-PBLG retains its diastereomer discrimination power. We also demonstrate that P3D simulations can define the different conformations of a flexible small molecule from sparse NMR data. Copernicus GmbH 2021-04-08 /pmc/articles/PMC10539764/ /pubmed/37904779 http://dx.doi.org/10.5194/mr-2-105-2021 Text en Copyright: © 2021 Alain Ibáñez de Opakua and Markus Zweckstetter https://creativecommons.org/licenses/by/4.0/This work is licensed under the Creative Commons Attribution 4.0 International License. To view a copy of this licence, visit https://creativecommons.org/licenses/by/4.0/ |
spellingShingle | Research Article Ibáñez de Opakua, Alain Zweckstetter, Markus Extending the applicability of P3D for structure determination of small molecules |
title | Extending the applicability of P3D for structure determination of small molecules |
title_full | Extending the applicability of P3D for structure determination of small molecules |
title_fullStr | Extending the applicability of P3D for structure determination of small molecules |
title_full_unstemmed | Extending the applicability of P3D for structure determination of small molecules |
title_short | Extending the applicability of P3D for structure determination of small molecules |
title_sort | extending the applicability of p3d for structure determination of small molecules |
topic | Research Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10539764/ https://www.ncbi.nlm.nih.gov/pubmed/37904779 http://dx.doi.org/10.5194/mr-2-105-2021 |
work_keys_str_mv | AT ibanezdeopakuaalain extendingtheapplicabilityofp3dforstructuredeterminationofsmallmolecules AT zweckstettermarkus extendingtheapplicabilityofp3dforstructuredeterminationofsmallmolecules |