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Site-selective generation of lanthanoid binding sites on proteins using 4-fluoro-2,6-dicyanopyridine

The paramagnetism of a lanthanoid tag site-specifically installed on a protein provides a rich source of structural information accessible by nuclear magnetic resonance (NMR) and electron paramagnetic resonance (EPR) spectroscopy. Here we report a lanthanoid tag for selective reaction with cysteine...

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Autores principales: Mekkattu Tharayil, Sreelakshmi, Mahawaththa, Mithun C., Feintuch, Akiva, Maleckis, Ansis, Ullrich, Sven, Morewood, Richard, Maxwell, Michael J., Huber, Thomas, Nitsche, Christoph, Goldfarb, Daniella, Otting, Gottfried
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Copernicus GmbH 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10539774/
https://www.ncbi.nlm.nih.gov/pubmed/37904871
http://dx.doi.org/10.5194/mr-3-169-2022
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author Mekkattu Tharayil, Sreelakshmi
Mahawaththa, Mithun C.
Feintuch, Akiva
Maleckis, Ansis
Ullrich, Sven
Morewood, Richard
Maxwell, Michael J.
Huber, Thomas
Nitsche, Christoph
Goldfarb, Daniella
Otting, Gottfried
author_facet Mekkattu Tharayil, Sreelakshmi
Mahawaththa, Mithun C.
Feintuch, Akiva
Maleckis, Ansis
Ullrich, Sven
Morewood, Richard
Maxwell, Michael J.
Huber, Thomas
Nitsche, Christoph
Goldfarb, Daniella
Otting, Gottfried
author_sort Mekkattu Tharayil, Sreelakshmi
collection PubMed
description The paramagnetism of a lanthanoid tag site-specifically installed on a protein provides a rich source of structural information accessible by nuclear magnetic resonance (NMR) and electron paramagnetic resonance (EPR) spectroscopy. Here we report a lanthanoid tag for selective reaction with cysteine or selenocysteine with formation of a (seleno)thioether bond and a short tether between the lanthanoid ion and the protein backbone. The tag is assembled on the protein in three steps, comprising (i) reaction with 4-fluoro-2,6-dicyanopyridine (FDCP); (ii) reaction of the cyano groups with [Formula: see text] -cysteine, penicillamine or [Formula: see text] -cysteine to complete the lanthanoid chelating moiety; and (iii) titration with a lanthanoid ion. FDCP reacts much faster with selenocysteine than cysteine, opening a route for selective tagging in the presence of solvent-exposed cysteine residues. Loaded with [Formula: see text] and [Formula: see text] ions, pseudocontact shifts were observed in protein NMR spectra, confirming that the tag delivers good immobilisation of the lanthanoid ion relative to the protein, which was also manifested in residual dipolar couplings. Completion of the tag with different 1,2-aminothiol compounds resulted in different magnetic susceptibility tensors. In addition, the tag proved suitable for measuring distance distributions in double electron–electron resonance experiments after titration with [Formula: see text]  ions.
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spelling pubmed-105397742023-10-30 Site-selective generation of lanthanoid binding sites on proteins using 4-fluoro-2,6-dicyanopyridine Mekkattu Tharayil, Sreelakshmi Mahawaththa, Mithun C. Feintuch, Akiva Maleckis, Ansis Ullrich, Sven Morewood, Richard Maxwell, Michael J. Huber, Thomas Nitsche, Christoph Goldfarb, Daniella Otting, Gottfried Magn Reson (Gott) Research Article The paramagnetism of a lanthanoid tag site-specifically installed on a protein provides a rich source of structural information accessible by nuclear magnetic resonance (NMR) and electron paramagnetic resonance (EPR) spectroscopy. Here we report a lanthanoid tag for selective reaction with cysteine or selenocysteine with formation of a (seleno)thioether bond and a short tether between the lanthanoid ion and the protein backbone. The tag is assembled on the protein in three steps, comprising (i) reaction with 4-fluoro-2,6-dicyanopyridine (FDCP); (ii) reaction of the cyano groups with [Formula: see text] -cysteine, penicillamine or [Formula: see text] -cysteine to complete the lanthanoid chelating moiety; and (iii) titration with a lanthanoid ion. FDCP reacts much faster with selenocysteine than cysteine, opening a route for selective tagging in the presence of solvent-exposed cysteine residues. Loaded with [Formula: see text] and [Formula: see text] ions, pseudocontact shifts were observed in protein NMR spectra, confirming that the tag delivers good immobilisation of the lanthanoid ion relative to the protein, which was also manifested in residual dipolar couplings. Completion of the tag with different 1,2-aminothiol compounds resulted in different magnetic susceptibility tensors. In addition, the tag proved suitable for measuring distance distributions in double electron–electron resonance experiments after titration with [Formula: see text]  ions. Copernicus GmbH 2022-09-13 /pmc/articles/PMC10539774/ /pubmed/37904871 http://dx.doi.org/10.5194/mr-3-169-2022 Text en Copyright: © 2022 Sreelakshmi Mekkattu Tharayil et al. https://creativecommons.org/licenses/by/4.0/This work is licensed under the Creative Commons Attribution 4.0 International License. To view a copy of this licence, visit https://creativecommons.org/licenses/by/4.0/
spellingShingle Research Article
Mekkattu Tharayil, Sreelakshmi
Mahawaththa, Mithun C.
Feintuch, Akiva
Maleckis, Ansis
Ullrich, Sven
Morewood, Richard
Maxwell, Michael J.
Huber, Thomas
Nitsche, Christoph
Goldfarb, Daniella
Otting, Gottfried
Site-selective generation of lanthanoid binding sites on proteins using 4-fluoro-2,6-dicyanopyridine
title Site-selective generation of lanthanoid binding sites on proteins using 4-fluoro-2,6-dicyanopyridine
title_full Site-selective generation of lanthanoid binding sites on proteins using 4-fluoro-2,6-dicyanopyridine
title_fullStr Site-selective generation of lanthanoid binding sites on proteins using 4-fluoro-2,6-dicyanopyridine
title_full_unstemmed Site-selective generation of lanthanoid binding sites on proteins using 4-fluoro-2,6-dicyanopyridine
title_short Site-selective generation of lanthanoid binding sites on proteins using 4-fluoro-2,6-dicyanopyridine
title_sort site-selective generation of lanthanoid binding sites on proteins using 4-fluoro-2,6-dicyanopyridine
topic Research Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10539774/
https://www.ncbi.nlm.nih.gov/pubmed/37904871
http://dx.doi.org/10.5194/mr-3-169-2022
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