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Rapid measurement of heteronuclear transverse relaxation rates using non-uniformly sampled R (1ρ) accordion experiments
Multidimensional, heteronuclear NMR relaxation methods are used extensively to characterize the dynamics of biological macromolecules. Acquisition of relaxation datasets on proteins typically requires significant measurement time, often several days. Accordion spectroscopy offers a powerful means to...
Autores principales: | , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Copernicus GmbH
2021
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10539792/ https://www.ncbi.nlm.nih.gov/pubmed/37905216 http://dx.doi.org/10.5194/mr-2-571-2021 |
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author | Wernersson, Sven Carlström, Göran Jakobsson, Andreas Akke, Mikael |
author_facet | Wernersson, Sven Carlström, Göran Jakobsson, Andreas Akke, Mikael |
author_sort | Wernersson, Sven |
collection | PubMed |
description | Multidimensional, heteronuclear NMR relaxation methods are used extensively to characterize the dynamics of biological macromolecules. Acquisition of relaxation datasets on proteins typically requires significant measurement time, often several days. Accordion spectroscopy offers a powerful means to shorten relaxation rate measurements by encoding the “relaxation dimension” into the indirect evolution period in multidimensional experiments. Time savings can also be achieved by non-uniform sampling (NUS) of multidimensional NMR data, which is used increasingly to improve spectral resolution or increase sensitivity per unit time. However, NUS is not commonly implemented in relaxation experiments, because most reconstruction algorithms are inherently nonlinear, leading to problems when estimating signal intensities, relaxation rate constants and their error bounds. We have previously shown how to avoid these shortcomings by combining accordion spectroscopy with NUS, followed by data reconstruction using sparse exponential mode analysis, thereby achieving a dramatic decrease in the total length of longitudinal relaxation experiments. Here, we present the corresponding transverse relaxation experiment, taking into account the special considerations required for its successful implementation in the framework of the accordion-NUS approach. We attain the highest possible precision in the relaxation rate constants by optimizing the NUS scheme with respect to the Cramér–Rao lower bound of the variance of the estimated parameter, given the total number of sampling points and the spectrum-specific signal characteristics. The resulting accordion-NUS [Formula: see text] relaxation experiment achieves comparable precision in the parameter estimates compared to conventional CPMG (Carr–Purcell–Meiboom–Gill) [Formula: see text] or spin-lock [Formula: see text] experiments while saving an order of magnitude in experiment time. |
format | Online Article Text |
id | pubmed-10539792 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2021 |
publisher | Copernicus GmbH |
record_format | MEDLINE/PubMed |
spelling | pubmed-105397922023-10-30 Rapid measurement of heteronuclear transverse relaxation rates using non-uniformly sampled R (1ρ) accordion experiments Wernersson, Sven Carlström, Göran Jakobsson, Andreas Akke, Mikael Magn Reson (Gott) Research Article Multidimensional, heteronuclear NMR relaxation methods are used extensively to characterize the dynamics of biological macromolecules. Acquisition of relaxation datasets on proteins typically requires significant measurement time, often several days. Accordion spectroscopy offers a powerful means to shorten relaxation rate measurements by encoding the “relaxation dimension” into the indirect evolution period in multidimensional experiments. Time savings can also be achieved by non-uniform sampling (NUS) of multidimensional NMR data, which is used increasingly to improve spectral resolution or increase sensitivity per unit time. However, NUS is not commonly implemented in relaxation experiments, because most reconstruction algorithms are inherently nonlinear, leading to problems when estimating signal intensities, relaxation rate constants and their error bounds. We have previously shown how to avoid these shortcomings by combining accordion spectroscopy with NUS, followed by data reconstruction using sparse exponential mode analysis, thereby achieving a dramatic decrease in the total length of longitudinal relaxation experiments. Here, we present the corresponding transverse relaxation experiment, taking into account the special considerations required for its successful implementation in the framework of the accordion-NUS approach. We attain the highest possible precision in the relaxation rate constants by optimizing the NUS scheme with respect to the Cramér–Rao lower bound of the variance of the estimated parameter, given the total number of sampling points and the spectrum-specific signal characteristics. The resulting accordion-NUS [Formula: see text] relaxation experiment achieves comparable precision in the parameter estimates compared to conventional CPMG (Carr–Purcell–Meiboom–Gill) [Formula: see text] or spin-lock [Formula: see text] experiments while saving an order of magnitude in experiment time. Copernicus GmbH 2021-07-12 /pmc/articles/PMC10539792/ /pubmed/37905216 http://dx.doi.org/10.5194/mr-2-571-2021 Text en Copyright: © 2021 Sven Wernersson et al. https://creativecommons.org/licenses/by/4.0/This work is licensed under the Creative Commons Attribution 4.0 International License. To view a copy of this licence, visit https://creativecommons.org/licenses/by/4.0/ |
spellingShingle | Research Article Wernersson, Sven Carlström, Göran Jakobsson, Andreas Akke, Mikael Rapid measurement of heteronuclear transverse relaxation rates using non-uniformly sampled R (1ρ) accordion experiments |
title | Rapid measurement of heteronuclear transverse relaxation rates using non-uniformly sampled R
(1ρ) accordion experiments |
title_full | Rapid measurement of heteronuclear transverse relaxation rates using non-uniformly sampled R
(1ρ) accordion experiments |
title_fullStr | Rapid measurement of heteronuclear transverse relaxation rates using non-uniformly sampled R
(1ρ) accordion experiments |
title_full_unstemmed | Rapid measurement of heteronuclear transverse relaxation rates using non-uniformly sampled R
(1ρ) accordion experiments |
title_short | Rapid measurement of heteronuclear transverse relaxation rates using non-uniformly sampled R
(1ρ) accordion experiments |
title_sort | rapid measurement of heteronuclear transverse relaxation rates using non-uniformly sampled r
(1ρ) accordion experiments |
topic | Research Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10539792/ https://www.ncbi.nlm.nih.gov/pubmed/37905216 http://dx.doi.org/10.5194/mr-2-571-2021 |
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