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Long-Range Conductivity in Proteins Mediated by Aromatic Residues

[Image: see text] Single-molecule measurements show that many proteins, lacking any redox cofactors, nonetheless exhibit electrical conductance on the order of a nanosiemen over 10 nm distances, implying that electrons can transit an entire protein in less than a nanosecond when subject to a potenti...

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Autores principales: Krishnan, Siddharth, Aksimentiev, Aleksei, Lindsay, Stuart, Matyushov, Dmitry
Formato: Online Artículo Texto
Lenguaje:English
Publicado: American Chemical Society 2023
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10540285/
https://www.ncbi.nlm.nih.gov/pubmed/37780537
http://dx.doi.org/10.1021/acsphyschemau.3c00017
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author Krishnan, Siddharth
Aksimentiev, Aleksei
Lindsay, Stuart
Matyushov, Dmitry
author_facet Krishnan, Siddharth
Aksimentiev, Aleksei
Lindsay, Stuart
Matyushov, Dmitry
author_sort Krishnan, Siddharth
collection PubMed
description [Image: see text] Single-molecule measurements show that many proteins, lacking any redox cofactors, nonetheless exhibit electrical conductance on the order of a nanosiemen over 10 nm distances, implying that electrons can transit an entire protein in less than a nanosecond when subject to a potential difference of less than 1 V. This is puzzling because, for fast transport (i.e., a free energy barrier of zero), the hopping rate is determined by the reorganization energy of approximately 0.8 eV, and this sets the time scale of a single hop to at least 1 μs. Furthermore, the Fermi energies of typical metal electrodes are far removed from the energies required for sequential oxidation and reduction of the aromatic residues of the protein, which should further reduce the hopping current. Here, we combine all-atom molecular dynamics (MD) simulations of non-redox-active proteins (consensus tetratricopeptide repeats) with an electron transfer theory to demonstrate a molecular mechanism that can account for the unexpectedly fast electron transport. According to our MD simulations, the reorganization energy produced by the energy shift on charging (the Stokes shift) is close to the conventional value of 0.8 eV. However, the non-ergodic sampling of molecular configurations by the protein results in reaction-reorganization energies, extracted directly from the distribution of the electrostatic energy fluctuations, that are only ∼0.2 eV, which is small enough to enable long-range conductivity, without invoking quantum coherent transport. Using the MD values of the reorganization energies, we calculate a current decay with distance that is in agreement with experiment.
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spelling pubmed-105402852023-09-30 Long-Range Conductivity in Proteins Mediated by Aromatic Residues Krishnan, Siddharth Aksimentiev, Aleksei Lindsay, Stuart Matyushov, Dmitry ACS Phys Chem Au [Image: see text] Single-molecule measurements show that many proteins, lacking any redox cofactors, nonetheless exhibit electrical conductance on the order of a nanosiemen over 10 nm distances, implying that electrons can transit an entire protein in less than a nanosecond when subject to a potential difference of less than 1 V. This is puzzling because, for fast transport (i.e., a free energy barrier of zero), the hopping rate is determined by the reorganization energy of approximately 0.8 eV, and this sets the time scale of a single hop to at least 1 μs. Furthermore, the Fermi energies of typical metal electrodes are far removed from the energies required for sequential oxidation and reduction of the aromatic residues of the protein, which should further reduce the hopping current. Here, we combine all-atom molecular dynamics (MD) simulations of non-redox-active proteins (consensus tetratricopeptide repeats) with an electron transfer theory to demonstrate a molecular mechanism that can account for the unexpectedly fast electron transport. According to our MD simulations, the reorganization energy produced by the energy shift on charging (the Stokes shift) is close to the conventional value of 0.8 eV. However, the non-ergodic sampling of molecular configurations by the protein results in reaction-reorganization energies, extracted directly from the distribution of the electrostatic energy fluctuations, that are only ∼0.2 eV, which is small enough to enable long-range conductivity, without invoking quantum coherent transport. Using the MD values of the reorganization energies, we calculate a current decay with distance that is in agreement with experiment. American Chemical Society 2023-06-02 /pmc/articles/PMC10540285/ /pubmed/37780537 http://dx.doi.org/10.1021/acsphyschemau.3c00017 Text en © 2023 The Authors. Published by American Chemical Society https://creativecommons.org/licenses/by-nc-nd/4.0/Permits non-commercial access and re-use, provided that author attribution and integrity are maintained; but does not permit creation of adaptations or other derivative works (https://creativecommons.org/licenses/by-nc-nd/4.0/).
spellingShingle Krishnan, Siddharth
Aksimentiev, Aleksei
Lindsay, Stuart
Matyushov, Dmitry
Long-Range Conductivity in Proteins Mediated by Aromatic Residues
title Long-Range Conductivity in Proteins Mediated by Aromatic Residues
title_full Long-Range Conductivity in Proteins Mediated by Aromatic Residues
title_fullStr Long-Range Conductivity in Proteins Mediated by Aromatic Residues
title_full_unstemmed Long-Range Conductivity in Proteins Mediated by Aromatic Residues
title_short Long-Range Conductivity in Proteins Mediated by Aromatic Residues
title_sort long-range conductivity in proteins mediated by aromatic residues
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10540285/
https://www.ncbi.nlm.nih.gov/pubmed/37780537
http://dx.doi.org/10.1021/acsphyschemau.3c00017
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