Cargando…

A multimodal radiomic machine learning approach to predict the LCK expression and clinical prognosis in high-grade serous ovarian cancer

We developed and validated a multimodal radiomic machine learning approach to noninvasively predict the expression of lymphocyte cell-specific protein-tyrosine kinase (LCK) expression and clinical prognosis of patients with high-grade serous ovarian cancer (HGSOC). We analyzed gene enrichment using...

Descripción completa

Detalles Bibliográficos
Autores principales: Zhan, Feng, He, Lidan, Yu, Yuanlin, Chen, Qian, Guo, Yina, Wang, Lili
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Nature Publishing Group UK 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10541909/
https://www.ncbi.nlm.nih.gov/pubmed/37773310
http://dx.doi.org/10.1038/s41598-023-43543-7
_version_ 1785113999746007040
author Zhan, Feng
He, Lidan
Yu, Yuanlin
Chen, Qian
Guo, Yina
Wang, Lili
author_facet Zhan, Feng
He, Lidan
Yu, Yuanlin
Chen, Qian
Guo, Yina
Wang, Lili
author_sort Zhan, Feng
collection PubMed
description We developed and validated a multimodal radiomic machine learning approach to noninvasively predict the expression of lymphocyte cell-specific protein-tyrosine kinase (LCK) expression and clinical prognosis of patients with high-grade serous ovarian cancer (HGSOC). We analyzed gene enrichment using 343 HGSOC cases extracted from The Cancer Genome Atlas. The corresponding biomedical computed tomography images accessed from The Cancer Imaging Archive were used to construct the radiomic signature (Radscore). A radiomic nomogram was built by combining the Radscore and clinical and genetic information based on multimodal analysis. We compared the model performances and clinical practicability via area under the curve (AUC), Kaplan–Meier survival, and decision curve analyses. LCK mRNA expression was associated with the prognosis of HGSOC patients, serving as a significant prognostic marker of the immune response and immune cells infiltration. Six radiomic characteristics were chosen to predict the expression of LCK and overall survival (OS) in HGSOC patients. The logistic regression (LR) radiomic model exhibited slightly better predictive abilities than the support vector machine model, as assessed by comparing combined results. The performance of the LR radiomic model for predicting the level of LCK expression with five-fold cross-validation achieved AUCs of 0.879 and 0.834, respectively, in the training and validation sets. Decision curve analysis at 60 months demonstrated the high clinical utility of our model within thresholds of 0.25 and 0.7. The radiomic nomograms were robust and displayed effective calibration. Abnormally high expression of LCK in HGSOC patients is significantly correlated with the tumor immune microenvironment and can be used as an essential indicator for predicting the prognosis of HGSOC. The multimodal radiomic machine learning approach can capture the heterogeneity of HGSOC, noninvasively predict the expression of LCK, and replace LCK for predictive analysis, providing a new idea for predicting the clinical prognosis of HGSOC and formulating a personalized treatment plan.
format Online
Article
Text
id pubmed-10541909
institution National Center for Biotechnology Information
language English
publishDate 2023
publisher Nature Publishing Group UK
record_format MEDLINE/PubMed
spelling pubmed-105419092023-10-02 A multimodal radiomic machine learning approach to predict the LCK expression and clinical prognosis in high-grade serous ovarian cancer Zhan, Feng He, Lidan Yu, Yuanlin Chen, Qian Guo, Yina Wang, Lili Sci Rep Article We developed and validated a multimodal radiomic machine learning approach to noninvasively predict the expression of lymphocyte cell-specific protein-tyrosine kinase (LCK) expression and clinical prognosis of patients with high-grade serous ovarian cancer (HGSOC). We analyzed gene enrichment using 343 HGSOC cases extracted from The Cancer Genome Atlas. The corresponding biomedical computed tomography images accessed from The Cancer Imaging Archive were used to construct the radiomic signature (Radscore). A radiomic nomogram was built by combining the Radscore and clinical and genetic information based on multimodal analysis. We compared the model performances and clinical practicability via area under the curve (AUC), Kaplan–Meier survival, and decision curve analyses. LCK mRNA expression was associated with the prognosis of HGSOC patients, serving as a significant prognostic marker of the immune response and immune cells infiltration. Six radiomic characteristics were chosen to predict the expression of LCK and overall survival (OS) in HGSOC patients. The logistic regression (LR) radiomic model exhibited slightly better predictive abilities than the support vector machine model, as assessed by comparing combined results. The performance of the LR radiomic model for predicting the level of LCK expression with five-fold cross-validation achieved AUCs of 0.879 and 0.834, respectively, in the training and validation sets. Decision curve analysis at 60 months demonstrated the high clinical utility of our model within thresholds of 0.25 and 0.7. The radiomic nomograms were robust and displayed effective calibration. Abnormally high expression of LCK in HGSOC patients is significantly correlated with the tumor immune microenvironment and can be used as an essential indicator for predicting the prognosis of HGSOC. The multimodal radiomic machine learning approach can capture the heterogeneity of HGSOC, noninvasively predict the expression of LCK, and replace LCK for predictive analysis, providing a new idea for predicting the clinical prognosis of HGSOC and formulating a personalized treatment plan. Nature Publishing Group UK 2023-09-29 /pmc/articles/PMC10541909/ /pubmed/37773310 http://dx.doi.org/10.1038/s41598-023-43543-7 Text en © The Author(s) 2023 https://creativecommons.org/licenses/by/4.0/Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) .
spellingShingle Article
Zhan, Feng
He, Lidan
Yu, Yuanlin
Chen, Qian
Guo, Yina
Wang, Lili
A multimodal radiomic machine learning approach to predict the LCK expression and clinical prognosis in high-grade serous ovarian cancer
title A multimodal radiomic machine learning approach to predict the LCK expression and clinical prognosis in high-grade serous ovarian cancer
title_full A multimodal radiomic machine learning approach to predict the LCK expression and clinical prognosis in high-grade serous ovarian cancer
title_fullStr A multimodal radiomic machine learning approach to predict the LCK expression and clinical prognosis in high-grade serous ovarian cancer
title_full_unstemmed A multimodal radiomic machine learning approach to predict the LCK expression and clinical prognosis in high-grade serous ovarian cancer
title_short A multimodal radiomic machine learning approach to predict the LCK expression and clinical prognosis in high-grade serous ovarian cancer
title_sort multimodal radiomic machine learning approach to predict the lck expression and clinical prognosis in high-grade serous ovarian cancer
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10541909/
https://www.ncbi.nlm.nih.gov/pubmed/37773310
http://dx.doi.org/10.1038/s41598-023-43543-7
work_keys_str_mv AT zhanfeng amultimodalradiomicmachinelearningapproachtopredictthelckexpressionandclinicalprognosisinhighgradeserousovariancancer
AT helidan amultimodalradiomicmachinelearningapproachtopredictthelckexpressionandclinicalprognosisinhighgradeserousovariancancer
AT yuyuanlin amultimodalradiomicmachinelearningapproachtopredictthelckexpressionandclinicalprognosisinhighgradeserousovariancancer
AT chenqian amultimodalradiomicmachinelearningapproachtopredictthelckexpressionandclinicalprognosisinhighgradeserousovariancancer
AT guoyina amultimodalradiomicmachinelearningapproachtopredictthelckexpressionandclinicalprognosisinhighgradeserousovariancancer
AT wanglili amultimodalradiomicmachinelearningapproachtopredictthelckexpressionandclinicalprognosisinhighgradeserousovariancancer
AT zhanfeng multimodalradiomicmachinelearningapproachtopredictthelckexpressionandclinicalprognosisinhighgradeserousovariancancer
AT helidan multimodalradiomicmachinelearningapproachtopredictthelckexpressionandclinicalprognosisinhighgradeserousovariancancer
AT yuyuanlin multimodalradiomicmachinelearningapproachtopredictthelckexpressionandclinicalprognosisinhighgradeserousovariancancer
AT chenqian multimodalradiomicmachinelearningapproachtopredictthelckexpressionandclinicalprognosisinhighgradeserousovariancancer
AT guoyina multimodalradiomicmachinelearningapproachtopredictthelckexpressionandclinicalprognosisinhighgradeserousovariancancer
AT wanglili multimodalradiomicmachinelearningapproachtopredictthelckexpressionandclinicalprognosisinhighgradeserousovariancancer