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Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae)

Sponges are among the earliest branching extant animals. As such, genetic data from this group are valuable for understanding the evolution of various traits and processes in other animals. However, like many marine organisms, they are notoriously difficult to sequence, and hence, genomic data are s...

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Autores principales: Steffen, Karin, Proux-Wéra, Estelle, Soler, Lucile, Churcher, Allison, Sundh, John, Cárdenas, Paco
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Oxford University Press 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10542158/
https://www.ncbi.nlm.nih.gov/pubmed/37619978
http://dx.doi.org/10.1093/g3journal/jkad192
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author Steffen, Karin
Proux-Wéra, Estelle
Soler, Lucile
Churcher, Allison
Sundh, John
Cárdenas, Paco
author_facet Steffen, Karin
Proux-Wéra, Estelle
Soler, Lucile
Churcher, Allison
Sundh, John
Cárdenas, Paco
author_sort Steffen, Karin
collection PubMed
description Sponges are among the earliest branching extant animals. As such, genetic data from this group are valuable for understanding the evolution of various traits and processes in other animals. However, like many marine organisms, they are notoriously difficult to sequence, and hence, genomic data are scarce. Here, we present the draft genome assembly for the North Atlantic deep-sea high microbial abundance species Geodia barretti Bowerbank 1858, from a single individual collected on the West Coast of Sweden. The nuclear genome assembly has 4,535 scaffolds, an N50 of 48,447 bp and a total length of 144 Mb; the mitochondrial genome is 17,996 bp long. BUSCO completeness was 71.5%. The genome was annotated using a combination of ab initio and evidence-based methods finding 31,884 protein-coding genes.
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spelling pubmed-105421582023-10-03 Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae) Steffen, Karin Proux-Wéra, Estelle Soler, Lucile Churcher, Allison Sundh, John Cárdenas, Paco G3 (Bethesda) Genome Report Sponges are among the earliest branching extant animals. As such, genetic data from this group are valuable for understanding the evolution of various traits and processes in other animals. However, like many marine organisms, they are notoriously difficult to sequence, and hence, genomic data are scarce. Here, we present the draft genome assembly for the North Atlantic deep-sea high microbial abundance species Geodia barretti Bowerbank 1858, from a single individual collected on the West Coast of Sweden. The nuclear genome assembly has 4,535 scaffolds, an N50 of 48,447 bp and a total length of 144 Mb; the mitochondrial genome is 17,996 bp long. BUSCO completeness was 71.5%. The genome was annotated using a combination of ab initio and evidence-based methods finding 31,884 protein-coding genes. Oxford University Press 2023-08-24 /pmc/articles/PMC10542158/ /pubmed/37619978 http://dx.doi.org/10.1093/g3journal/jkad192 Text en © The Author(s) 2023. Published by Oxford University Press on behalf of The Genetics Society of America. https://creativecommons.org/licenses/by/4.0/This is an Open Access article distributed under the terms of the Creative Commons Attribution License (https://creativecommons.org/licenses/by/4.0/), which permits unrestricted reuse, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Genome Report
Steffen, Karin
Proux-Wéra, Estelle
Soler, Lucile
Churcher, Allison
Sundh, John
Cárdenas, Paco
Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae)
title Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae)
title_full Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae)
title_fullStr Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae)
title_full_unstemmed Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae)
title_short Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae)
title_sort whole genome sequence of the deep-sea sponge geodia barretti (metazoa, porifera, demospongiae)
topic Genome Report
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10542158/
https://www.ncbi.nlm.nih.gov/pubmed/37619978
http://dx.doi.org/10.1093/g3journal/jkad192
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