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Automated customization of large-scale spiking network models to neuronal population activity
Understanding brain function is facilitated by constructing computational models that accurately reproduce aspects of brain activity. Networks of spiking neurons capture the underlying biophysics of neuronal circuits, yet the dependence of their activity on model parameters is notoriously complex. A...
Autores principales: | , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Cold Spring Harbor Laboratory
2023
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10542160/ https://www.ncbi.nlm.nih.gov/pubmed/37790533 http://dx.doi.org/10.1101/2023.09.21.558920 |
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author | Wu, Shenghao Huang, Chengcheng Snyder, Adam Smith, Matthew Doiron, Brent Yu, Byron |
author_facet | Wu, Shenghao Huang, Chengcheng Snyder, Adam Smith, Matthew Doiron, Brent Yu, Byron |
author_sort | Wu, Shenghao |
collection | PubMed |
description | Understanding brain function is facilitated by constructing computational models that accurately reproduce aspects of brain activity. Networks of spiking neurons capture the underlying biophysics of neuronal circuits, yet the dependence of their activity on model parameters is notoriously complex. As a result, heuristic methods have been used to configure spiking network models, which can lead to an inability to discover activity regimes complex enough to match large-scale neuronal recordings. Here we propose an automatic procedure, Spiking Network Optimization using Population Statistics (SNOPS), to customize spiking network models that reproduce the population-wide covariability of large-scale neuronal recordings. We first confirmed that SNOPS accurately recovers simulated neural activity statistics. Then, we applied SNOPS to recordings in macaque visual and prefrontal cortices and discovered previously unknown limitations of spiking network models. Taken together, SNOPS can guide the development of network models and thereby enable deeper insight into how networks of neurons give rise to brain function. |
format | Online Article Text |
id | pubmed-10542160 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2023 |
publisher | Cold Spring Harbor Laboratory |
record_format | MEDLINE/PubMed |
spelling | pubmed-105421602023-10-03 Automated customization of large-scale spiking network models to neuronal population activity Wu, Shenghao Huang, Chengcheng Snyder, Adam Smith, Matthew Doiron, Brent Yu, Byron bioRxiv Article Understanding brain function is facilitated by constructing computational models that accurately reproduce aspects of brain activity. Networks of spiking neurons capture the underlying biophysics of neuronal circuits, yet the dependence of their activity on model parameters is notoriously complex. As a result, heuristic methods have been used to configure spiking network models, which can lead to an inability to discover activity regimes complex enough to match large-scale neuronal recordings. Here we propose an automatic procedure, Spiking Network Optimization using Population Statistics (SNOPS), to customize spiking network models that reproduce the population-wide covariability of large-scale neuronal recordings. We first confirmed that SNOPS accurately recovers simulated neural activity statistics. Then, we applied SNOPS to recordings in macaque visual and prefrontal cortices and discovered previously unknown limitations of spiking network models. Taken together, SNOPS can guide the development of network models and thereby enable deeper insight into how networks of neurons give rise to brain function. Cold Spring Harbor Laboratory 2023-09-22 /pmc/articles/PMC10542160/ /pubmed/37790533 http://dx.doi.org/10.1101/2023.09.21.558920 Text en https://creativecommons.org/licenses/by-nc-nd/4.0/This work is licensed under a Creative Commons Attribution-NonCommercial-NoDerivatives 4.0 International License (https://creativecommons.org/licenses/by-nc-nd/4.0/) , which allows reusers to copy and distribute the material in any medium or format in unadapted form only, for noncommercial purposes only, and only so long as attribution is given to the creator. |
spellingShingle | Article Wu, Shenghao Huang, Chengcheng Snyder, Adam Smith, Matthew Doiron, Brent Yu, Byron Automated customization of large-scale spiking network models to neuronal population activity |
title | Automated customization of large-scale spiking network models to neuronal population activity |
title_full | Automated customization of large-scale spiking network models to neuronal population activity |
title_fullStr | Automated customization of large-scale spiking network models to neuronal population activity |
title_full_unstemmed | Automated customization of large-scale spiking network models to neuronal population activity |
title_short | Automated customization of large-scale spiking network models to neuronal population activity |
title_sort | automated customization of large-scale spiking network models to neuronal population activity |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10542160/ https://www.ncbi.nlm.nih.gov/pubmed/37790533 http://dx.doi.org/10.1101/2023.09.21.558920 |
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