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Automated customization of large-scale spiking network models to neuronal population activity

Understanding brain function is facilitated by constructing computational models that accurately reproduce aspects of brain activity. Networks of spiking neurons capture the underlying biophysics of neuronal circuits, yet the dependence of their activity on model parameters is notoriously complex. A...

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Autores principales: Wu, Shenghao, Huang, Chengcheng, Snyder, Adam, Smith, Matthew, Doiron, Brent, Yu, Byron
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Cold Spring Harbor Laboratory 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10542160/
https://www.ncbi.nlm.nih.gov/pubmed/37790533
http://dx.doi.org/10.1101/2023.09.21.558920
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author Wu, Shenghao
Huang, Chengcheng
Snyder, Adam
Smith, Matthew
Doiron, Brent
Yu, Byron
author_facet Wu, Shenghao
Huang, Chengcheng
Snyder, Adam
Smith, Matthew
Doiron, Brent
Yu, Byron
author_sort Wu, Shenghao
collection PubMed
description Understanding brain function is facilitated by constructing computational models that accurately reproduce aspects of brain activity. Networks of spiking neurons capture the underlying biophysics of neuronal circuits, yet the dependence of their activity on model parameters is notoriously complex. As a result, heuristic methods have been used to configure spiking network models, which can lead to an inability to discover activity regimes complex enough to match large-scale neuronal recordings. Here we propose an automatic procedure, Spiking Network Optimization using Population Statistics (SNOPS), to customize spiking network models that reproduce the population-wide covariability of large-scale neuronal recordings. We first confirmed that SNOPS accurately recovers simulated neural activity statistics. Then, we applied SNOPS to recordings in macaque visual and prefrontal cortices and discovered previously unknown limitations of spiking network models. Taken together, SNOPS can guide the development of network models and thereby enable deeper insight into how networks of neurons give rise to brain function.
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spelling pubmed-105421602023-10-03 Automated customization of large-scale spiking network models to neuronal population activity Wu, Shenghao Huang, Chengcheng Snyder, Adam Smith, Matthew Doiron, Brent Yu, Byron bioRxiv Article Understanding brain function is facilitated by constructing computational models that accurately reproduce aspects of brain activity. Networks of spiking neurons capture the underlying biophysics of neuronal circuits, yet the dependence of their activity on model parameters is notoriously complex. As a result, heuristic methods have been used to configure spiking network models, which can lead to an inability to discover activity regimes complex enough to match large-scale neuronal recordings. Here we propose an automatic procedure, Spiking Network Optimization using Population Statistics (SNOPS), to customize spiking network models that reproduce the population-wide covariability of large-scale neuronal recordings. We first confirmed that SNOPS accurately recovers simulated neural activity statistics. Then, we applied SNOPS to recordings in macaque visual and prefrontal cortices and discovered previously unknown limitations of spiking network models. Taken together, SNOPS can guide the development of network models and thereby enable deeper insight into how networks of neurons give rise to brain function. Cold Spring Harbor Laboratory 2023-09-22 /pmc/articles/PMC10542160/ /pubmed/37790533 http://dx.doi.org/10.1101/2023.09.21.558920 Text en https://creativecommons.org/licenses/by-nc-nd/4.0/This work is licensed under a Creative Commons Attribution-NonCommercial-NoDerivatives 4.0 International License (https://creativecommons.org/licenses/by-nc-nd/4.0/) , which allows reusers to copy and distribute the material in any medium or format in unadapted form only, for noncommercial purposes only, and only so long as attribution is given to the creator.
spellingShingle Article
Wu, Shenghao
Huang, Chengcheng
Snyder, Adam
Smith, Matthew
Doiron, Brent
Yu, Byron
Automated customization of large-scale spiking network models to neuronal population activity
title Automated customization of large-scale spiking network models to neuronal population activity
title_full Automated customization of large-scale spiking network models to neuronal population activity
title_fullStr Automated customization of large-scale spiking network models to neuronal population activity
title_full_unstemmed Automated customization of large-scale spiking network models to neuronal population activity
title_short Automated customization of large-scale spiking network models to neuronal population activity
title_sort automated customization of large-scale spiking network models to neuronal population activity
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10542160/
https://www.ncbi.nlm.nih.gov/pubmed/37790533
http://dx.doi.org/10.1101/2023.09.21.558920
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