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Flavobacterium okayamense sp. nov. isolated from surface seawater

Strain KK2020170(T), a Gram-stain negative, yellow colony-forming bacterium, was isolated from surface seawater sampled in Kojima Bay, Okayama, Japan. Phylogenetic analysis based on the 16S rRNA gene revealed that strain KK2020170(T) belongs to the genus Flavobacterium, with Flavobacterium haoranii...

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Autores principales: Kitahara, Kei, Muzembo, Basilua Andre, Morohoshi, Sho, Kunihiro, Tadao, Tazato, Nozomi, Ohno, Ayumu, Uesaka, Kazuma, Taniguchi, Makoto, Miyoshi, Shin-ichi
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Springer Berlin Heidelberg 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10542280/
https://www.ncbi.nlm.nih.gov/pubmed/37773547
http://dx.doi.org/10.1007/s00203-023-03682-x
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author Kitahara, Kei
Muzembo, Basilua Andre
Morohoshi, Sho
Kunihiro, Tadao
Tazato, Nozomi
Ohno, Ayumu
Uesaka, Kazuma
Taniguchi, Makoto
Miyoshi, Shin-ichi
author_facet Kitahara, Kei
Muzembo, Basilua Andre
Morohoshi, Sho
Kunihiro, Tadao
Tazato, Nozomi
Ohno, Ayumu
Uesaka, Kazuma
Taniguchi, Makoto
Miyoshi, Shin-ichi
author_sort Kitahara, Kei
collection PubMed
description Strain KK2020170(T), a Gram-stain negative, yellow colony-forming bacterium, was isolated from surface seawater sampled in Kojima Bay, Okayama, Japan. Phylogenetic analysis based on the 16S rRNA gene revealed that strain KK2020170(T) belongs to the genus Flavobacterium, with Flavobacterium haoranii LQY-7(T) (98.1% similarity) being its closest relative, followed by Flavobacterium sediminis MEBiC07310(T) (96.9%) and Flavobacterium urocaniciphilum YIT 12746(T) (96.0%). Whole-genome shotgun sequencing showed that strain KK2020170(T), when paralleled with F. haoranii LQY-7( T), had 81.3% average nucleotide identity, and 24.6% in silico DNA–DNA hybridization values, respectively. The DNA G + C content of strain KK2020170(T) was 31.1 mol%. The most abundant fatty acids (> 10%) of strain KK2020170(T) were iso-C15: 0, iso-C17: 0 3-OH and iso-C15: 1 G. The dominant respiratory quinone of the strain was menaquinone MK-6. Based on the phylogenetic and phenotypic analysis results, we propose that strain KK2020170(T) represents a novel species, for which the name Flavobacterium okayamense sp. nov. has been proposed. The type strain is KK2020170(T) (= ATCC TSD-280( T) = NBRC 115344( T)). SUPPLEMENTARY INFORMATION: The online version contains supplementary material available at 10.1007/s00203-023-03682-x.
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spelling pubmed-105422802023-10-03 Flavobacterium okayamense sp. nov. isolated from surface seawater Kitahara, Kei Muzembo, Basilua Andre Morohoshi, Sho Kunihiro, Tadao Tazato, Nozomi Ohno, Ayumu Uesaka, Kazuma Taniguchi, Makoto Miyoshi, Shin-ichi Arch Microbiol Original Paper Strain KK2020170(T), a Gram-stain negative, yellow colony-forming bacterium, was isolated from surface seawater sampled in Kojima Bay, Okayama, Japan. Phylogenetic analysis based on the 16S rRNA gene revealed that strain KK2020170(T) belongs to the genus Flavobacterium, with Flavobacterium haoranii LQY-7(T) (98.1% similarity) being its closest relative, followed by Flavobacterium sediminis MEBiC07310(T) (96.9%) and Flavobacterium urocaniciphilum YIT 12746(T) (96.0%). Whole-genome shotgun sequencing showed that strain KK2020170(T), when paralleled with F. haoranii LQY-7( T), had 81.3% average nucleotide identity, and 24.6% in silico DNA–DNA hybridization values, respectively. The DNA G + C content of strain KK2020170(T) was 31.1 mol%. The most abundant fatty acids (> 10%) of strain KK2020170(T) were iso-C15: 0, iso-C17: 0 3-OH and iso-C15: 1 G. The dominant respiratory quinone of the strain was menaquinone MK-6. Based on the phylogenetic and phenotypic analysis results, we propose that strain KK2020170(T) represents a novel species, for which the name Flavobacterium okayamense sp. nov. has been proposed. The type strain is KK2020170(T) (= ATCC TSD-280( T) = NBRC 115344( T)). SUPPLEMENTARY INFORMATION: The online version contains supplementary material available at 10.1007/s00203-023-03682-x. Springer Berlin Heidelberg 2023-09-29 2023 /pmc/articles/PMC10542280/ /pubmed/37773547 http://dx.doi.org/10.1007/s00203-023-03682-x Text en © The Author(s) 2023 https://creativecommons.org/licenses/by/4.0/Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) .
spellingShingle Original Paper
Kitahara, Kei
Muzembo, Basilua Andre
Morohoshi, Sho
Kunihiro, Tadao
Tazato, Nozomi
Ohno, Ayumu
Uesaka, Kazuma
Taniguchi, Makoto
Miyoshi, Shin-ichi
Flavobacterium okayamense sp. nov. isolated from surface seawater
title Flavobacterium okayamense sp. nov. isolated from surface seawater
title_full Flavobacterium okayamense sp. nov. isolated from surface seawater
title_fullStr Flavobacterium okayamense sp. nov. isolated from surface seawater
title_full_unstemmed Flavobacterium okayamense sp. nov. isolated from surface seawater
title_short Flavobacterium okayamense sp. nov. isolated from surface seawater
title_sort flavobacterium okayamense sp. nov. isolated from surface seawater
topic Original Paper
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10542280/
https://www.ncbi.nlm.nih.gov/pubmed/37773547
http://dx.doi.org/10.1007/s00203-023-03682-x
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