Cargando…

Targeted sequencing of selected functional genes in patients with wild-type transthyretin amyloidosis

OBJECTIVE: Wild-type transthyretin (ATTRwt) amyloidosis is caused by the misfolding and deposition of the transthyretin protein (TTR) in the absence of mutations in the TTR gene. Studies regarding the variant form of ATTR amyloidosis (ATTRv) suggest that the presence of single-nucleotide polymorphis...

Descripción completa

Detalles Bibliográficos
Autores principales: Moreno-Gázquez, Inmaculada, Pérez-Palacios, Raquel, Abengochea-Quílez, Lucia, Lahuerta Pueyo, Carmen, Roteta Unceta Barrenechea, Ana, Andrés Gracia, Alejandro, Aibar Arregui, Miguel Angel, Menao Guillén, Sebastián
Formato: Online Artículo Texto
Lenguaje:English
Publicado: BioMed Central 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10546623/
https://www.ncbi.nlm.nih.gov/pubmed/37784196
http://dx.doi.org/10.1186/s13104-023-06491-z
_version_ 1785114894874443776
author Moreno-Gázquez, Inmaculada
Pérez-Palacios, Raquel
Abengochea-Quílez, Lucia
Lahuerta Pueyo, Carmen
Roteta Unceta Barrenechea, Ana
Andrés Gracia, Alejandro
Aibar Arregui, Miguel Angel
Menao Guillén, Sebastián
author_facet Moreno-Gázquez, Inmaculada
Pérez-Palacios, Raquel
Abengochea-Quílez, Lucia
Lahuerta Pueyo, Carmen
Roteta Unceta Barrenechea, Ana
Andrés Gracia, Alejandro
Aibar Arregui, Miguel Angel
Menao Guillén, Sebastián
author_sort Moreno-Gázquez, Inmaculada
collection PubMed
description OBJECTIVE: Wild-type transthyretin (ATTRwt) amyloidosis is caused by the misfolding and deposition of the transthyretin protein (TTR) in the absence of mutations in the TTR gene. Studies regarding the variant form of ATTR amyloidosis (ATTRv) suggest that the presence of single-nucleotide polymorphisms (SNP) in genes other than the TTR, may influence the development of the disease. However, other genetic factors involved in the aetiopathogenesis of ATTRwt are currently unknown. This work investigates the presence of sequence variants in genes selected for their possible impact on ATTRwt amyloidosis. To do so, targeted sequencing of 84 protein-coding genes was performed in a cohort of 27 patients diagnosed with ATTRwt. RESULTS: After applying quality and frequency filtering criteria, 72 rare or novel genetic variants were found. Subsequent classification according to the ACMG-AMP criteria resulted in 17 variants classified as of uncertain significance in 14 different genes. To our knowledge, this is the first report associating novel gene variants with ATTRwt amyloidosis. In conclusion, this study provides potential insights into the aetiopathogenesis of ATTRwt amyloidosis by linking novel coding-gene variants with the occurrence of the disease. SUPPLEMENTARY INFORMATION: The online version contains supplementary material available at 10.1186/s13104-023-06491-z.
format Online
Article
Text
id pubmed-10546623
institution National Center for Biotechnology Information
language English
publishDate 2023
publisher BioMed Central
record_format MEDLINE/PubMed
spelling pubmed-105466232023-10-04 Targeted sequencing of selected functional genes in patients with wild-type transthyretin amyloidosis Moreno-Gázquez, Inmaculada Pérez-Palacios, Raquel Abengochea-Quílez, Lucia Lahuerta Pueyo, Carmen Roteta Unceta Barrenechea, Ana Andrés Gracia, Alejandro Aibar Arregui, Miguel Angel Menao Guillén, Sebastián BMC Res Notes Research Note OBJECTIVE: Wild-type transthyretin (ATTRwt) amyloidosis is caused by the misfolding and deposition of the transthyretin protein (TTR) in the absence of mutations in the TTR gene. Studies regarding the variant form of ATTR amyloidosis (ATTRv) suggest that the presence of single-nucleotide polymorphisms (SNP) in genes other than the TTR, may influence the development of the disease. However, other genetic factors involved in the aetiopathogenesis of ATTRwt are currently unknown. This work investigates the presence of sequence variants in genes selected for their possible impact on ATTRwt amyloidosis. To do so, targeted sequencing of 84 protein-coding genes was performed in a cohort of 27 patients diagnosed with ATTRwt. RESULTS: After applying quality and frequency filtering criteria, 72 rare or novel genetic variants were found. Subsequent classification according to the ACMG-AMP criteria resulted in 17 variants classified as of uncertain significance in 14 different genes. To our knowledge, this is the first report associating novel gene variants with ATTRwt amyloidosis. In conclusion, this study provides potential insights into the aetiopathogenesis of ATTRwt amyloidosis by linking novel coding-gene variants with the occurrence of the disease. SUPPLEMENTARY INFORMATION: The online version contains supplementary material available at 10.1186/s13104-023-06491-z. BioMed Central 2023-10-02 /pmc/articles/PMC10546623/ /pubmed/37784196 http://dx.doi.org/10.1186/s13104-023-06491-z Text en © The Author(s) 2023 https://creativecommons.org/licenses/by/4.0/Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) . The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/ (https://creativecommons.org/publicdomain/zero/1.0/) ) applies to the data made available in this article, unless otherwise stated in a credit line to the data.
spellingShingle Research Note
Moreno-Gázquez, Inmaculada
Pérez-Palacios, Raquel
Abengochea-Quílez, Lucia
Lahuerta Pueyo, Carmen
Roteta Unceta Barrenechea, Ana
Andrés Gracia, Alejandro
Aibar Arregui, Miguel Angel
Menao Guillén, Sebastián
Targeted sequencing of selected functional genes in patients with wild-type transthyretin amyloidosis
title Targeted sequencing of selected functional genes in patients with wild-type transthyretin amyloidosis
title_full Targeted sequencing of selected functional genes in patients with wild-type transthyretin amyloidosis
title_fullStr Targeted sequencing of selected functional genes in patients with wild-type transthyretin amyloidosis
title_full_unstemmed Targeted sequencing of selected functional genes in patients with wild-type transthyretin amyloidosis
title_short Targeted sequencing of selected functional genes in patients with wild-type transthyretin amyloidosis
title_sort targeted sequencing of selected functional genes in patients with wild-type transthyretin amyloidosis
topic Research Note
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10546623/
https://www.ncbi.nlm.nih.gov/pubmed/37784196
http://dx.doi.org/10.1186/s13104-023-06491-z
work_keys_str_mv AT morenogazquezinmaculada targetedsequencingofselectedfunctionalgenesinpatientswithwildtypetransthyretinamyloidosis
AT perezpalaciosraquel targetedsequencingofselectedfunctionalgenesinpatientswithwildtypetransthyretinamyloidosis
AT abengocheaquilezlucia targetedsequencingofselectedfunctionalgenesinpatientswithwildtypetransthyretinamyloidosis
AT lahuertapueyocarmen targetedsequencingofselectedfunctionalgenesinpatientswithwildtypetransthyretinamyloidosis
AT rotetauncetabarrenecheaana targetedsequencingofselectedfunctionalgenesinpatientswithwildtypetransthyretinamyloidosis
AT andresgraciaalejandro targetedsequencingofselectedfunctionalgenesinpatientswithwildtypetransthyretinamyloidosis
AT aibararreguimiguelangel targetedsequencingofselectedfunctionalgenesinpatientswithwildtypetransthyretinamyloidosis
AT menaoguillensebastian targetedsequencingofselectedfunctionalgenesinpatientswithwildtypetransthyretinamyloidosis