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Cervical cell’s nucleus segmentation through an improved UNet architecture
Precise segmentation of the nucleus is vital for computer-aided diagnosis (CAD) in cervical cytology. Automated delineation of the cervical nucleus has notorious challenges due to clumped cells, color variation, noise, and fuzzy boundaries. Due to its standout performance in medical image analysis,...
Autores principales: | , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Public Library of Science
2023
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10547184/ https://www.ncbi.nlm.nih.gov/pubmed/37788295 http://dx.doi.org/10.1371/journal.pone.0283568 |
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author | Rasheed, Assad Shirazi, Syed Hamad Umar, Arif Iqbal Shahzad, Muhammad Yousaf, Waqas Khan, Zakir |
author_facet | Rasheed, Assad Shirazi, Syed Hamad Umar, Arif Iqbal Shahzad, Muhammad Yousaf, Waqas Khan, Zakir |
author_sort | Rasheed, Assad |
collection | PubMed |
description | Precise segmentation of the nucleus is vital for computer-aided diagnosis (CAD) in cervical cytology. Automated delineation of the cervical nucleus has notorious challenges due to clumped cells, color variation, noise, and fuzzy boundaries. Due to its standout performance in medical image analysis, deep learning has gained attention from other techniques. We have proposed a deep learning model, namely C-UNet (Cervical-UNet), to segment cervical nuclei from overlapped, fuzzy, and blurred cervical cell smear images. Cross-scale features integration based on a bi-directional feature pyramid network (BiFPN) and wide context unit are used in the encoder of classic UNet architecture to learn spatial and local features. The decoder of the improved network has two inter-connected decoders that mutually optimize and integrate these features to produce segmentation masks. Each component of the proposed C-UNet is extensively evaluated to judge its effectiveness on a complex cervical cell dataset. Different data augmentation techniques were employed to enhance the proposed model’s training. Experimental results have shown that the proposed model outperformed extant models, i.e., CGAN (Conditional Generative Adversarial Network), DeepLabv3, Mask-RCNN (Region-Based Convolutional Neural Network), and FCN (Fully Connected Network), on the employed dataset used in this study and ISBI-2014 (International Symposium on Biomedical Imaging 2014), ISBI-2015 datasets. The C-UNet achieved an object-level accuracy of 93%, pixel-level accuracy of 92.56%, object-level recall of 95.32%, pixel-level recall of 92.27%, Dice coefficient of 93.12%, and F1-score of 94.96% on complex cervical images dataset. |
format | Online Article Text |
id | pubmed-10547184 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2023 |
publisher | Public Library of Science |
record_format | MEDLINE/PubMed |
spelling | pubmed-105471842023-10-04 Cervical cell’s nucleus segmentation through an improved UNet architecture Rasheed, Assad Shirazi, Syed Hamad Umar, Arif Iqbal Shahzad, Muhammad Yousaf, Waqas Khan, Zakir PLoS One Research Article Precise segmentation of the nucleus is vital for computer-aided diagnosis (CAD) in cervical cytology. Automated delineation of the cervical nucleus has notorious challenges due to clumped cells, color variation, noise, and fuzzy boundaries. Due to its standout performance in medical image analysis, deep learning has gained attention from other techniques. We have proposed a deep learning model, namely C-UNet (Cervical-UNet), to segment cervical nuclei from overlapped, fuzzy, and blurred cervical cell smear images. Cross-scale features integration based on a bi-directional feature pyramid network (BiFPN) and wide context unit are used in the encoder of classic UNet architecture to learn spatial and local features. The decoder of the improved network has two inter-connected decoders that mutually optimize and integrate these features to produce segmentation masks. Each component of the proposed C-UNet is extensively evaluated to judge its effectiveness on a complex cervical cell dataset. Different data augmentation techniques were employed to enhance the proposed model’s training. Experimental results have shown that the proposed model outperformed extant models, i.e., CGAN (Conditional Generative Adversarial Network), DeepLabv3, Mask-RCNN (Region-Based Convolutional Neural Network), and FCN (Fully Connected Network), on the employed dataset used in this study and ISBI-2014 (International Symposium on Biomedical Imaging 2014), ISBI-2015 datasets. The C-UNet achieved an object-level accuracy of 93%, pixel-level accuracy of 92.56%, object-level recall of 95.32%, pixel-level recall of 92.27%, Dice coefficient of 93.12%, and F1-score of 94.96% on complex cervical images dataset. Public Library of Science 2023-10-03 /pmc/articles/PMC10547184/ /pubmed/37788295 http://dx.doi.org/10.1371/journal.pone.0283568 Text en © 2023 Rasheed et al https://creativecommons.org/licenses/by/4.0/This is an open access article distributed under the terms of the Creative Commons Attribution License (https://creativecommons.org/licenses/by/4.0/) , which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited. |
spellingShingle | Research Article Rasheed, Assad Shirazi, Syed Hamad Umar, Arif Iqbal Shahzad, Muhammad Yousaf, Waqas Khan, Zakir Cervical cell’s nucleus segmentation through an improved UNet architecture |
title | Cervical cell’s nucleus segmentation through an improved UNet architecture |
title_full | Cervical cell’s nucleus segmentation through an improved UNet architecture |
title_fullStr | Cervical cell’s nucleus segmentation through an improved UNet architecture |
title_full_unstemmed | Cervical cell’s nucleus segmentation through an improved UNet architecture |
title_short | Cervical cell’s nucleus segmentation through an improved UNet architecture |
title_sort | cervical cell’s nucleus segmentation through an improved unet architecture |
topic | Research Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10547184/ https://www.ncbi.nlm.nih.gov/pubmed/37788295 http://dx.doi.org/10.1371/journal.pone.0283568 |
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