Cargando…

Cervical cell’s nucleus segmentation through an improved UNet architecture

Precise segmentation of the nucleus is vital for computer-aided diagnosis (CAD) in cervical cytology. Automated delineation of the cervical nucleus has notorious challenges due to clumped cells, color variation, noise, and fuzzy boundaries. Due to its standout performance in medical image analysis,...

Descripción completa

Detalles Bibliográficos
Autores principales: Rasheed, Assad, Shirazi, Syed Hamad, Umar, Arif Iqbal, Shahzad, Muhammad, Yousaf, Waqas, Khan, Zakir
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Public Library of Science 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10547184/
https://www.ncbi.nlm.nih.gov/pubmed/37788295
http://dx.doi.org/10.1371/journal.pone.0283568
_version_ 1785115006740725760
author Rasheed, Assad
Shirazi, Syed Hamad
Umar, Arif Iqbal
Shahzad, Muhammad
Yousaf, Waqas
Khan, Zakir
author_facet Rasheed, Assad
Shirazi, Syed Hamad
Umar, Arif Iqbal
Shahzad, Muhammad
Yousaf, Waqas
Khan, Zakir
author_sort Rasheed, Assad
collection PubMed
description Precise segmentation of the nucleus is vital for computer-aided diagnosis (CAD) in cervical cytology. Automated delineation of the cervical nucleus has notorious challenges due to clumped cells, color variation, noise, and fuzzy boundaries. Due to its standout performance in medical image analysis, deep learning has gained attention from other techniques. We have proposed a deep learning model, namely C-UNet (Cervical-UNet), to segment cervical nuclei from overlapped, fuzzy, and blurred cervical cell smear images. Cross-scale features integration based on a bi-directional feature pyramid network (BiFPN) and wide context unit are used in the encoder of classic UNet architecture to learn spatial and local features. The decoder of the improved network has two inter-connected decoders that mutually optimize and integrate these features to produce segmentation masks. Each component of the proposed C-UNet is extensively evaluated to judge its effectiveness on a complex cervical cell dataset. Different data augmentation techniques were employed to enhance the proposed model’s training. Experimental results have shown that the proposed model outperformed extant models, i.e., CGAN (Conditional Generative Adversarial Network), DeepLabv3, Mask-RCNN (Region-Based Convolutional Neural Network), and FCN (Fully Connected Network), on the employed dataset used in this study and ISBI-2014 (International Symposium on Biomedical Imaging 2014), ISBI-2015 datasets. The C-UNet achieved an object-level accuracy of 93%, pixel-level accuracy of 92.56%, object-level recall of 95.32%, pixel-level recall of 92.27%, Dice coefficient of 93.12%, and F1-score of 94.96% on complex cervical images dataset.
format Online
Article
Text
id pubmed-10547184
institution National Center for Biotechnology Information
language English
publishDate 2023
publisher Public Library of Science
record_format MEDLINE/PubMed
spelling pubmed-105471842023-10-04 Cervical cell’s nucleus segmentation through an improved UNet architecture Rasheed, Assad Shirazi, Syed Hamad Umar, Arif Iqbal Shahzad, Muhammad Yousaf, Waqas Khan, Zakir PLoS One Research Article Precise segmentation of the nucleus is vital for computer-aided diagnosis (CAD) in cervical cytology. Automated delineation of the cervical nucleus has notorious challenges due to clumped cells, color variation, noise, and fuzzy boundaries. Due to its standout performance in medical image analysis, deep learning has gained attention from other techniques. We have proposed a deep learning model, namely C-UNet (Cervical-UNet), to segment cervical nuclei from overlapped, fuzzy, and blurred cervical cell smear images. Cross-scale features integration based on a bi-directional feature pyramid network (BiFPN) and wide context unit are used in the encoder of classic UNet architecture to learn spatial and local features. The decoder of the improved network has two inter-connected decoders that mutually optimize and integrate these features to produce segmentation masks. Each component of the proposed C-UNet is extensively evaluated to judge its effectiveness on a complex cervical cell dataset. Different data augmentation techniques were employed to enhance the proposed model’s training. Experimental results have shown that the proposed model outperformed extant models, i.e., CGAN (Conditional Generative Adversarial Network), DeepLabv3, Mask-RCNN (Region-Based Convolutional Neural Network), and FCN (Fully Connected Network), on the employed dataset used in this study and ISBI-2014 (International Symposium on Biomedical Imaging 2014), ISBI-2015 datasets. The C-UNet achieved an object-level accuracy of 93%, pixel-level accuracy of 92.56%, object-level recall of 95.32%, pixel-level recall of 92.27%, Dice coefficient of 93.12%, and F1-score of 94.96% on complex cervical images dataset. Public Library of Science 2023-10-03 /pmc/articles/PMC10547184/ /pubmed/37788295 http://dx.doi.org/10.1371/journal.pone.0283568 Text en © 2023 Rasheed et al https://creativecommons.org/licenses/by/4.0/This is an open access article distributed under the terms of the Creative Commons Attribution License (https://creativecommons.org/licenses/by/4.0/) , which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.
spellingShingle Research Article
Rasheed, Assad
Shirazi, Syed Hamad
Umar, Arif Iqbal
Shahzad, Muhammad
Yousaf, Waqas
Khan, Zakir
Cervical cell’s nucleus segmentation through an improved UNet architecture
title Cervical cell’s nucleus segmentation through an improved UNet architecture
title_full Cervical cell’s nucleus segmentation through an improved UNet architecture
title_fullStr Cervical cell’s nucleus segmentation through an improved UNet architecture
title_full_unstemmed Cervical cell’s nucleus segmentation through an improved UNet architecture
title_short Cervical cell’s nucleus segmentation through an improved UNet architecture
title_sort cervical cell’s nucleus segmentation through an improved unet architecture
topic Research Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10547184/
https://www.ncbi.nlm.nih.gov/pubmed/37788295
http://dx.doi.org/10.1371/journal.pone.0283568
work_keys_str_mv AT rasheedassad cervicalcellsnucleussegmentationthroughanimprovedunetarchitecture
AT shirazisyedhamad cervicalcellsnucleussegmentationthroughanimprovedunetarchitecture
AT umararifiqbal cervicalcellsnucleussegmentationthroughanimprovedunetarchitecture
AT shahzadmuhammad cervicalcellsnucleussegmentationthroughanimprovedunetarchitecture
AT yousafwaqas cervicalcellsnucleussegmentationthroughanimprovedunetarchitecture
AT khanzakir cervicalcellsnucleussegmentationthroughanimprovedunetarchitecture