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Application of Entity-BERT model based on neuroscience and brain-like cognition in electronic medical record entity recognition

INTRODUCTION: In the medical field, electronic medical records contain a large amount of textual information, and the unstructured nature of this information makes data extraction and analysis challenging. Therefore, automatic extraction of entity information from electronic medical records has beco...

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Autores principales: Lu, Weijia, Jiang, Jiehui, Shi, Yaxiang, Zhong, Xiaowei, Gu, Jun, Huangfu, Lixia, Gong, Ming
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Frontiers Media S.A. 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10547885/
https://www.ncbi.nlm.nih.gov/pubmed/37799340
http://dx.doi.org/10.3389/fnins.2023.1259652
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author Lu, Weijia
Jiang, Jiehui
Shi, Yaxiang
Zhong, Xiaowei
Gu, Jun
Huangfu, Lixia
Gong, Ming
author_facet Lu, Weijia
Jiang, Jiehui
Shi, Yaxiang
Zhong, Xiaowei
Gu, Jun
Huangfu, Lixia
Gong, Ming
author_sort Lu, Weijia
collection PubMed
description INTRODUCTION: In the medical field, electronic medical records contain a large amount of textual information, and the unstructured nature of this information makes data extraction and analysis challenging. Therefore, automatic extraction of entity information from electronic medical records has become a significant issue in the healthcare domain. METHODS: To address this problem, this paper proposes a deep learning-based entity information extraction model called Entity-BERT. The model aims to leverage the powerful feature extraction capabilities of deep learning and the pre-training language representation learning of BERT(Bidirectional Encoder Representations from Transformers), enabling it to automatically learn and recognize various entity types in medical electronic records, including medical terminologies, disease names, drug information, and more, providing more effective support for medical research and clinical practices. The Entity-BERT model utilizes a multi-layer neural network and cross-attention mechanism to process and fuse information at different levels and types, resembling the hierarchical and distributed processing of the human brain. Additionally, the model employs pre-trained language and sequence models to process and learn textual data, sharing similarities with the language processing and semantic understanding of the human brain. Furthermore, the Entity-BERT model can capture contextual information and long-term dependencies, combining the cross-attention mechanism to handle the complex and diverse language expressions in electronic medical records, resembling the information processing method of the human brain in many aspects. Additionally, exploring how to utilize competitive learning, adaptive regulation, and synaptic plasticity to optimize the model's prediction results, automatically adjust its parameters, and achieve adaptive learning and dynamic adjustments from the perspective of neuroscience and brain-like cognition is of interest. RESULTS AND DISCUSSION: Experimental results demonstrate that the Entity-BERT model achieves outstanding performance in entity recognition tasks within electronic medical records, surpassing other existing entity recognition models. This research not only provides more efficient and accurate natural language processing technology for the medical and health field but also introduces new ideas and directions for the design and optimization of deep learning models.
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spelling pubmed-105478852023-10-05 Application of Entity-BERT model based on neuroscience and brain-like cognition in electronic medical record entity recognition Lu, Weijia Jiang, Jiehui Shi, Yaxiang Zhong, Xiaowei Gu, Jun Huangfu, Lixia Gong, Ming Front Neurosci Neuroscience INTRODUCTION: In the medical field, electronic medical records contain a large amount of textual information, and the unstructured nature of this information makes data extraction and analysis challenging. Therefore, automatic extraction of entity information from electronic medical records has become a significant issue in the healthcare domain. METHODS: To address this problem, this paper proposes a deep learning-based entity information extraction model called Entity-BERT. The model aims to leverage the powerful feature extraction capabilities of deep learning and the pre-training language representation learning of BERT(Bidirectional Encoder Representations from Transformers), enabling it to automatically learn and recognize various entity types in medical electronic records, including medical terminologies, disease names, drug information, and more, providing more effective support for medical research and clinical practices. The Entity-BERT model utilizes a multi-layer neural network and cross-attention mechanism to process and fuse information at different levels and types, resembling the hierarchical and distributed processing of the human brain. Additionally, the model employs pre-trained language and sequence models to process and learn textual data, sharing similarities with the language processing and semantic understanding of the human brain. Furthermore, the Entity-BERT model can capture contextual information and long-term dependencies, combining the cross-attention mechanism to handle the complex and diverse language expressions in electronic medical records, resembling the information processing method of the human brain in many aspects. Additionally, exploring how to utilize competitive learning, adaptive regulation, and synaptic plasticity to optimize the model's prediction results, automatically adjust its parameters, and achieve adaptive learning and dynamic adjustments from the perspective of neuroscience and brain-like cognition is of interest. RESULTS AND DISCUSSION: Experimental results demonstrate that the Entity-BERT model achieves outstanding performance in entity recognition tasks within electronic medical records, surpassing other existing entity recognition models. This research not only provides more efficient and accurate natural language processing technology for the medical and health field but also introduces new ideas and directions for the design and optimization of deep learning models. Frontiers Media S.A. 2023-09-20 /pmc/articles/PMC10547885/ /pubmed/37799340 http://dx.doi.org/10.3389/fnins.2023.1259652 Text en Copyright © 2023 Lu, Jiang, Shi, Zhong, Gu, Huangfu and Gong. https://creativecommons.org/licenses/by/4.0/This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.
spellingShingle Neuroscience
Lu, Weijia
Jiang, Jiehui
Shi, Yaxiang
Zhong, Xiaowei
Gu, Jun
Huangfu, Lixia
Gong, Ming
Application of Entity-BERT model based on neuroscience and brain-like cognition in electronic medical record entity recognition
title Application of Entity-BERT model based on neuroscience and brain-like cognition in electronic medical record entity recognition
title_full Application of Entity-BERT model based on neuroscience and brain-like cognition in electronic medical record entity recognition
title_fullStr Application of Entity-BERT model based on neuroscience and brain-like cognition in electronic medical record entity recognition
title_full_unstemmed Application of Entity-BERT model based on neuroscience and brain-like cognition in electronic medical record entity recognition
title_short Application of Entity-BERT model based on neuroscience and brain-like cognition in electronic medical record entity recognition
title_sort application of entity-bert model based on neuroscience and brain-like cognition in electronic medical record entity recognition
topic Neuroscience
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10547885/
https://www.ncbi.nlm.nih.gov/pubmed/37799340
http://dx.doi.org/10.3389/fnins.2023.1259652
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