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Genetic admixture and diversity in Thai domestic chickens revealed through analysis of Lao Pa Koi fighting cocks

Lao Pa Koi (LPK) chicken is a popular fighting breed in Thailand, prized for (its unique characteristics acquired by selective breeding), and a valuable model for exploring the genetic diversity and admixture of red junglefowls and domestic chickens. In this study, genetic structure and diversity of...

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Autores principales: Wattanadilokcahtkun, Pish, Chalermwong, Piangjai, Singchat, Worapong, Wongloet, Wongsathit, Chaiyes, Aingorn, Tanglertpaibul, Nivit, Budi, Trifan, Panthum, Thitipong, Ariyaraphong, Nattakan, Ahmad, Syed Farhan, Lisachov, Artem, Muangmai, Narongrit, Nunome, Mitsuo, Han, Kyudong, Matsuda, Yoichi, Duengkae, Prateep, Srikulnath, Kornsorn
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Public Library of Science 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10550135/
https://www.ncbi.nlm.nih.gov/pubmed/37792798
http://dx.doi.org/10.1371/journal.pone.0289983
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author Wattanadilokcahtkun, Pish
Chalermwong, Piangjai
Singchat, Worapong
Wongloet, Wongsathit
Chaiyes, Aingorn
Tanglertpaibul, Nivit
Budi, Trifan
Panthum, Thitipong
Ariyaraphong, Nattakan
Ahmad, Syed Farhan
Lisachov, Artem
Muangmai, Narongrit
Nunome, Mitsuo
Han, Kyudong
Matsuda, Yoichi
Duengkae, Prateep
Srikulnath, Kornsorn
author_facet Wattanadilokcahtkun, Pish
Chalermwong, Piangjai
Singchat, Worapong
Wongloet, Wongsathit
Chaiyes, Aingorn
Tanglertpaibul, Nivit
Budi, Trifan
Panthum, Thitipong
Ariyaraphong, Nattakan
Ahmad, Syed Farhan
Lisachov, Artem
Muangmai, Narongrit
Nunome, Mitsuo
Han, Kyudong
Matsuda, Yoichi
Duengkae, Prateep
Srikulnath, Kornsorn
author_sort Wattanadilokcahtkun, Pish
collection PubMed
description Lao Pa Koi (LPK) chicken is a popular fighting breed in Thailand, prized for (its unique characteristics acquired by selective breeding), and a valuable model for exploring the genetic diversity and admixture of red junglefowls and domestic chickens. In this study, genetic structure and diversity of LPK chicken were assessed using 28 microsatellite markers and mitochondrial DNA (mtDNA) D-loop sequences, and the findings were compared to a gene pool library from “The Siam Chicken Bioresource Project”. High genetic variability was observed in LPK chickens using mtDNA D-loop haplotype analysis, and six haplotypes were identified. Microsatellite data revealed 182 alleles, with an average of 6.5 alleles per locus. These results confirmed the occurrence of genetic admixture of red junglefowl and Thai domestic chickens in LPK chicken breed. A maximum entropy modeling approach was used to analyze the spatial suitability and to assess the adaptive evolution of LPK chickens in diverse local environments. The model identified 82.52% of the area studied as unsuitable, and 9.34%, 7.11%, and 2.02% of the area indicated moderate, low, and high suitability, respectively. The highest contribution rate to land suitability for LPK chickens was found at an elevation of 100–250 m, suggesting the importance of elevation for their potential distribution. The results of this study provide valuable insights into the genetic origin of LPK chicken breed and identify resources for future genetic improvement.
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spelling pubmed-105501352023-10-05 Genetic admixture and diversity in Thai domestic chickens revealed through analysis of Lao Pa Koi fighting cocks Wattanadilokcahtkun, Pish Chalermwong, Piangjai Singchat, Worapong Wongloet, Wongsathit Chaiyes, Aingorn Tanglertpaibul, Nivit Budi, Trifan Panthum, Thitipong Ariyaraphong, Nattakan Ahmad, Syed Farhan Lisachov, Artem Muangmai, Narongrit Nunome, Mitsuo Han, Kyudong Matsuda, Yoichi Duengkae, Prateep Srikulnath, Kornsorn PLoS One Research Article Lao Pa Koi (LPK) chicken is a popular fighting breed in Thailand, prized for (its unique characteristics acquired by selective breeding), and a valuable model for exploring the genetic diversity and admixture of red junglefowls and domestic chickens. In this study, genetic structure and diversity of LPK chicken were assessed using 28 microsatellite markers and mitochondrial DNA (mtDNA) D-loop sequences, and the findings were compared to a gene pool library from “The Siam Chicken Bioresource Project”. High genetic variability was observed in LPK chickens using mtDNA D-loop haplotype analysis, and six haplotypes were identified. Microsatellite data revealed 182 alleles, with an average of 6.5 alleles per locus. These results confirmed the occurrence of genetic admixture of red junglefowl and Thai domestic chickens in LPK chicken breed. A maximum entropy modeling approach was used to analyze the spatial suitability and to assess the adaptive evolution of LPK chickens in diverse local environments. The model identified 82.52% of the area studied as unsuitable, and 9.34%, 7.11%, and 2.02% of the area indicated moderate, low, and high suitability, respectively. The highest contribution rate to land suitability for LPK chickens was found at an elevation of 100–250 m, suggesting the importance of elevation for their potential distribution. The results of this study provide valuable insights into the genetic origin of LPK chicken breed and identify resources for future genetic improvement. Public Library of Science 2023-10-04 /pmc/articles/PMC10550135/ /pubmed/37792798 http://dx.doi.org/10.1371/journal.pone.0289983 Text en © 2023 Wattanadilokcahtkun et al https://creativecommons.org/licenses/by/4.0/This is an open access article distributed under the terms of the Creative Commons Attribution License (https://creativecommons.org/licenses/by/4.0/) , which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.
spellingShingle Research Article
Wattanadilokcahtkun, Pish
Chalermwong, Piangjai
Singchat, Worapong
Wongloet, Wongsathit
Chaiyes, Aingorn
Tanglertpaibul, Nivit
Budi, Trifan
Panthum, Thitipong
Ariyaraphong, Nattakan
Ahmad, Syed Farhan
Lisachov, Artem
Muangmai, Narongrit
Nunome, Mitsuo
Han, Kyudong
Matsuda, Yoichi
Duengkae, Prateep
Srikulnath, Kornsorn
Genetic admixture and diversity in Thai domestic chickens revealed through analysis of Lao Pa Koi fighting cocks
title Genetic admixture and diversity in Thai domestic chickens revealed through analysis of Lao Pa Koi fighting cocks
title_full Genetic admixture and diversity in Thai domestic chickens revealed through analysis of Lao Pa Koi fighting cocks
title_fullStr Genetic admixture and diversity in Thai domestic chickens revealed through analysis of Lao Pa Koi fighting cocks
title_full_unstemmed Genetic admixture and diversity in Thai domestic chickens revealed through analysis of Lao Pa Koi fighting cocks
title_short Genetic admixture and diversity in Thai domestic chickens revealed through analysis of Lao Pa Koi fighting cocks
title_sort genetic admixture and diversity in thai domestic chickens revealed through analysis of lao pa koi fighting cocks
topic Research Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10550135/
https://www.ncbi.nlm.nih.gov/pubmed/37792798
http://dx.doi.org/10.1371/journal.pone.0289983
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