Cargando…
An Adaptive Generalized Leaky Integrate-and-Fire Model for Hippocampal CA1 Pyramidal Neurons and Interneurons
Full-scale morphologically and biophysically realistic model networks, aiming at modeling multiple brain areas, provide an invaluable tool to make significant scientific advances from in-silico experiments on cognitive functions to digital twin implementations. Due to the current technical limitatio...
Autores principales: | , , , , , , |
---|---|
Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Springer US
2023
|
Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10550887/ https://www.ncbi.nlm.nih.gov/pubmed/37792146 http://dx.doi.org/10.1007/s11538-023-01206-8 |
_version_ | 1785115645857234944 |
---|---|
author | Marasco, Addolorata Spera, Emiliano De Falco, Vittorio Iuorio, Annalisa Lupascu, Carmen Alina Solinas, Sergio Migliore, Michele |
author_facet | Marasco, Addolorata Spera, Emiliano De Falco, Vittorio Iuorio, Annalisa Lupascu, Carmen Alina Solinas, Sergio Migliore, Michele |
author_sort | Marasco, Addolorata |
collection | PubMed |
description | Full-scale morphologically and biophysically realistic model networks, aiming at modeling multiple brain areas, provide an invaluable tool to make significant scientific advances from in-silico experiments on cognitive functions to digital twin implementations. Due to the current technical limitations of supercomputer systems in terms of computational power and memory requirements, these networks must be implemented using (at least) simplified neurons. A class of models which achieve a reasonable compromise between accuracy and computational efficiency is given by generalized leaky integrate-and fire models complemented by suitable initial and update conditions. However, we found that these models cannot reproduce the complex and highly variable firing dynamics exhibited by neurons in several brain regions, such as the hippocampus. In this work, we propose an adaptive generalized leaky integrate-and-fire model for hippocampal CA1 neurons and interneurons, in which the nonlinear nature of the firing dynamics is successfully reproduced by linear ordinary differential equations equipped with nonlinear and more realistic initial and update conditions after each spike event, which strictly depends on the external stimulation current. A mathematical analysis of the equilibria stability as well as the monotonicity properties of the analytical solution for the membrane potential allowed (i) to determine general constraints on model parameters, reducing the computational cost of an optimization procedure based on spike times in response to a set of constant currents injections; (ii) to identify additional constraints to quantitatively reproduce and predict the experimental traces from 85 neurons and interneurons in response to any stimulation protocol using constant and piecewise constant current injections. Finally, this approach allows to easily implement a procedure to create infinite copies of neurons with mathematically controlled firing properties, statistically indistinguishable from experiments, to better reproduce the full range and variability of the firing scenarios observed in a real network. SUPPLEMENTARY INFORMATION: The online version contains supplementary material available at 10.1007/s11538-023-01206-8. |
format | Online Article Text |
id | pubmed-10550887 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2023 |
publisher | Springer US |
record_format | MEDLINE/PubMed |
spelling | pubmed-105508872023-10-06 An Adaptive Generalized Leaky Integrate-and-Fire Model for Hippocampal CA1 Pyramidal Neurons and Interneurons Marasco, Addolorata Spera, Emiliano De Falco, Vittorio Iuorio, Annalisa Lupascu, Carmen Alina Solinas, Sergio Migliore, Michele Bull Math Biol Original Paper Full-scale morphologically and biophysically realistic model networks, aiming at modeling multiple brain areas, provide an invaluable tool to make significant scientific advances from in-silico experiments on cognitive functions to digital twin implementations. Due to the current technical limitations of supercomputer systems in terms of computational power and memory requirements, these networks must be implemented using (at least) simplified neurons. A class of models which achieve a reasonable compromise between accuracy and computational efficiency is given by generalized leaky integrate-and fire models complemented by suitable initial and update conditions. However, we found that these models cannot reproduce the complex and highly variable firing dynamics exhibited by neurons in several brain regions, such as the hippocampus. In this work, we propose an adaptive generalized leaky integrate-and-fire model for hippocampal CA1 neurons and interneurons, in which the nonlinear nature of the firing dynamics is successfully reproduced by linear ordinary differential equations equipped with nonlinear and more realistic initial and update conditions after each spike event, which strictly depends on the external stimulation current. A mathematical analysis of the equilibria stability as well as the monotonicity properties of the analytical solution for the membrane potential allowed (i) to determine general constraints on model parameters, reducing the computational cost of an optimization procedure based on spike times in response to a set of constant currents injections; (ii) to identify additional constraints to quantitatively reproduce and predict the experimental traces from 85 neurons and interneurons in response to any stimulation protocol using constant and piecewise constant current injections. Finally, this approach allows to easily implement a procedure to create infinite copies of neurons with mathematically controlled firing properties, statistically indistinguishable from experiments, to better reproduce the full range and variability of the firing scenarios observed in a real network. SUPPLEMENTARY INFORMATION: The online version contains supplementary material available at 10.1007/s11538-023-01206-8. Springer US 2023-10-04 2023 /pmc/articles/PMC10550887/ /pubmed/37792146 http://dx.doi.org/10.1007/s11538-023-01206-8 Text en © The Author(s) 2023, corrected publication 2023 https://creativecommons.org/licenses/by/4.0/Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) . |
spellingShingle | Original Paper Marasco, Addolorata Spera, Emiliano De Falco, Vittorio Iuorio, Annalisa Lupascu, Carmen Alina Solinas, Sergio Migliore, Michele An Adaptive Generalized Leaky Integrate-and-Fire Model for Hippocampal CA1 Pyramidal Neurons and Interneurons |
title | An Adaptive Generalized Leaky Integrate-and-Fire Model for Hippocampal CA1 Pyramidal Neurons and Interneurons |
title_full | An Adaptive Generalized Leaky Integrate-and-Fire Model for Hippocampal CA1 Pyramidal Neurons and Interneurons |
title_fullStr | An Adaptive Generalized Leaky Integrate-and-Fire Model for Hippocampal CA1 Pyramidal Neurons and Interneurons |
title_full_unstemmed | An Adaptive Generalized Leaky Integrate-and-Fire Model for Hippocampal CA1 Pyramidal Neurons and Interneurons |
title_short | An Adaptive Generalized Leaky Integrate-and-Fire Model for Hippocampal CA1 Pyramidal Neurons and Interneurons |
title_sort | adaptive generalized leaky integrate-and-fire model for hippocampal ca1 pyramidal neurons and interneurons |
topic | Original Paper |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10550887/ https://www.ncbi.nlm.nih.gov/pubmed/37792146 http://dx.doi.org/10.1007/s11538-023-01206-8 |
work_keys_str_mv | AT marascoaddolorata anadaptivegeneralizedleakyintegrateandfiremodelforhippocampalca1pyramidalneuronsandinterneurons AT speraemiliano anadaptivegeneralizedleakyintegrateandfiremodelforhippocampalca1pyramidalneuronsandinterneurons AT defalcovittorio anadaptivegeneralizedleakyintegrateandfiremodelforhippocampalca1pyramidalneuronsandinterneurons AT iuorioannalisa anadaptivegeneralizedleakyintegrateandfiremodelforhippocampalca1pyramidalneuronsandinterneurons AT lupascucarmenalina anadaptivegeneralizedleakyintegrateandfiremodelforhippocampalca1pyramidalneuronsandinterneurons AT solinassergio anadaptivegeneralizedleakyintegrateandfiremodelforhippocampalca1pyramidalneuronsandinterneurons AT miglioremichele anadaptivegeneralizedleakyintegrateandfiremodelforhippocampalca1pyramidalneuronsandinterneurons AT marascoaddolorata adaptivegeneralizedleakyintegrateandfiremodelforhippocampalca1pyramidalneuronsandinterneurons AT speraemiliano adaptivegeneralizedleakyintegrateandfiremodelforhippocampalca1pyramidalneuronsandinterneurons AT defalcovittorio adaptivegeneralizedleakyintegrateandfiremodelforhippocampalca1pyramidalneuronsandinterneurons AT iuorioannalisa adaptivegeneralizedleakyintegrateandfiremodelforhippocampalca1pyramidalneuronsandinterneurons AT lupascucarmenalina adaptivegeneralizedleakyintegrateandfiremodelforhippocampalca1pyramidalneuronsandinterneurons AT solinassergio adaptivegeneralizedleakyintegrateandfiremodelforhippocampalca1pyramidalneuronsandinterneurons AT miglioremichele adaptivegeneralizedleakyintegrateandfiremodelforhippocampalca1pyramidalneuronsandinterneurons |