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Chromosome-level genome assembly of an important wolfberry fruit fly (Neoceratitis asiatica Becker)
Tephritidae pests are significant agricultural pests with a notable impact on the economy, with a wide range of species and most having broad host ranges and strong reproductive abilities. However, the wolfberry fruit fly, Neoceratitis asiatica (Becker), is a Tephritidae fly which only harms wolfber...
Autores principales: | , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
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Nature Publishing Group UK
2023
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10551018/ https://www.ncbi.nlm.nih.gov/pubmed/37794161 http://dx.doi.org/10.1038/s41597-023-02601-5 |
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author | Guo, Shaokun Liu, Bo He, Jia Zhao, Zihua Zhang, Rong Li, Zhihong |
author_facet | Guo, Shaokun Liu, Bo He, Jia Zhao, Zihua Zhang, Rong Li, Zhihong |
author_sort | Guo, Shaokun |
collection | PubMed |
description | Tephritidae pests are significant agricultural pests with a notable impact on the economy, with a wide range of species and most having broad host ranges and strong reproductive abilities. However, the wolfberry fruit fly, Neoceratitis asiatica (Becker), is a Tephritidae fly which only harms wolfberry. Here, we assembled and annotated N. asiatica genome at the chromosome level and compared it with the genomic and transcriptomic information from other Tephritidae flies. The assembled genome of N. asiatica had a size of 563.8 Mb and achieved a completeness level of 99.1%, 18,387 genes were annotated totally. All contigs were assembled into 7 linkage groups with an N50 of 93.166 Mb assisted by the Hi-C technique. The high-quality genome developed here will provide a significant resource for exploring the genetic basis of the adaptive and reproductive differences among various Tephritidae pests, and provides an important theoretical basis for the prevention and control of Tephritidae pests. |
format | Online Article Text |
id | pubmed-10551018 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2023 |
publisher | Nature Publishing Group UK |
record_format | MEDLINE/PubMed |
spelling | pubmed-105510182023-10-06 Chromosome-level genome assembly of an important wolfberry fruit fly (Neoceratitis asiatica Becker) Guo, Shaokun Liu, Bo He, Jia Zhao, Zihua Zhang, Rong Li, Zhihong Sci Data Data Descriptor Tephritidae pests are significant agricultural pests with a notable impact on the economy, with a wide range of species and most having broad host ranges and strong reproductive abilities. However, the wolfberry fruit fly, Neoceratitis asiatica (Becker), is a Tephritidae fly which only harms wolfberry. Here, we assembled and annotated N. asiatica genome at the chromosome level and compared it with the genomic and transcriptomic information from other Tephritidae flies. The assembled genome of N. asiatica had a size of 563.8 Mb and achieved a completeness level of 99.1%, 18,387 genes were annotated totally. All contigs were assembled into 7 linkage groups with an N50 of 93.166 Mb assisted by the Hi-C technique. The high-quality genome developed here will provide a significant resource for exploring the genetic basis of the adaptive and reproductive differences among various Tephritidae pests, and provides an important theoretical basis for the prevention and control of Tephritidae pests. Nature Publishing Group UK 2023-10-04 /pmc/articles/PMC10551018/ /pubmed/37794161 http://dx.doi.org/10.1038/s41597-023-02601-5 Text en © The Author(s) 2023 https://creativecommons.org/licenses/by/4.0/Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) . |
spellingShingle | Data Descriptor Guo, Shaokun Liu, Bo He, Jia Zhao, Zihua Zhang, Rong Li, Zhihong Chromosome-level genome assembly of an important wolfberry fruit fly (Neoceratitis asiatica Becker) |
title | Chromosome-level genome assembly of an important wolfberry fruit fly (Neoceratitis asiatica Becker) |
title_full | Chromosome-level genome assembly of an important wolfberry fruit fly (Neoceratitis asiatica Becker) |
title_fullStr | Chromosome-level genome assembly of an important wolfberry fruit fly (Neoceratitis asiatica Becker) |
title_full_unstemmed | Chromosome-level genome assembly of an important wolfberry fruit fly (Neoceratitis asiatica Becker) |
title_short | Chromosome-level genome assembly of an important wolfberry fruit fly (Neoceratitis asiatica Becker) |
title_sort | chromosome-level genome assembly of an important wolfberry fruit fly (neoceratitis asiatica becker) |
topic | Data Descriptor |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10551018/ https://www.ncbi.nlm.nih.gov/pubmed/37794161 http://dx.doi.org/10.1038/s41597-023-02601-5 |
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