Cargando…

The ribosomal protein P0A is required for embryo development in rice

BACKGROUND: The P-stalk is a conserved and vital structural element of ribosome. The eukaryotic P-stalk exists as a P0-(P1-P2)(2) pentameric complex, in which P0 function as a base structure for incorporating the stalk onto 60S pre-ribosome. Prior studies have suggested that P0 genes are indispensab...

Descripción completa

Detalles Bibliográficos
Autores principales: Chang, Zhenyi, Wang, Xia, Pan, Xiaoying, Yan, Wei, Wu, Wenshi, zhuang, Yi, Li, Zhiai, Wang, Dan, Yuan, Shuting, Xu, Chunjue, Chen, Zhufeng, Liu, Dongfeng, Chen, Zi Sheng, Tang, Xiaoyan, Wu, Jianxin
Formato: Online Artículo Texto
Lenguaje:English
Publicado: BioMed Central 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10552409/
https://www.ncbi.nlm.nih.gov/pubmed/37798654
http://dx.doi.org/10.1186/s12870-023-04445-y
_version_ 1785115956446494720
author Chang, Zhenyi
Wang, Xia
Pan, Xiaoying
Yan, Wei
Wu, Wenshi
zhuang, Yi
Li, Zhiai
Wang, Dan
Yuan, Shuting
Xu, Chunjue
Chen, Zhufeng
Liu, Dongfeng
Chen, Zi Sheng
Tang, Xiaoyan
Wu, Jianxin
author_facet Chang, Zhenyi
Wang, Xia
Pan, Xiaoying
Yan, Wei
Wu, Wenshi
zhuang, Yi
Li, Zhiai
Wang, Dan
Yuan, Shuting
Xu, Chunjue
Chen, Zhufeng
Liu, Dongfeng
Chen, Zi Sheng
Tang, Xiaoyan
Wu, Jianxin
author_sort Chang, Zhenyi
collection PubMed
description BACKGROUND: The P-stalk is a conserved and vital structural element of ribosome. The eukaryotic P-stalk exists as a P0-(P1-P2)(2) pentameric complex, in which P0 function as a base structure for incorporating the stalk onto 60S pre-ribosome. Prior studies have suggested that P0 genes are indispensable for survival in yeast and animals. However, the functions of P0 genes in plants remain elusive. RESULTS: In the present study, we show that rice has three P0 genes predicted to encode highly conserved proteins OsP0A, OsP0B and OsP0C. All of these P0 proteins were localized both in cytoplasm and nucleus, and all interacted with OsP1. Intriguingly, the transcripts of OsP0A presented more than 90% of the total P0 transcripts. Moreover, knockout of OsP0A led to embryo lethality, while single or double knockout of OsP0B and OsP0C did not show any visible defects in rice. The genomic DNA of OsP0A could well complement the lethal phenotypes of osp0a mutant. Finally, sequence and syntenic analyses revealed that OsP0C evolved from OsP0A, and that duplication of genomic fragment harboring OsP0C further gave birth to OsP0B, and both of these duplication events might happen prior to the differentiation of indica and japonica subspecies in rice ancestor. CONCLUSION: These data suggested that OsP0A functions as the predominant P0 gene, playing an essential role in embryo development in rice. Our findings highlighted the importance of P0 genes in plant development. SUPPLEMENTARY INFORMATION: The online version contains supplementary material available at 10.1186/s12870-023-04445-y.
format Online
Article
Text
id pubmed-10552409
institution National Center for Biotechnology Information
language English
publishDate 2023
publisher BioMed Central
record_format MEDLINE/PubMed
spelling pubmed-105524092023-10-06 The ribosomal protein P0A is required for embryo development in rice Chang, Zhenyi Wang, Xia Pan, Xiaoying Yan, Wei Wu, Wenshi zhuang, Yi Li, Zhiai Wang, Dan Yuan, Shuting Xu, Chunjue Chen, Zhufeng Liu, Dongfeng Chen, Zi Sheng Tang, Xiaoyan Wu, Jianxin BMC Plant Biol Research BACKGROUND: The P-stalk is a conserved and vital structural element of ribosome. The eukaryotic P-stalk exists as a P0-(P1-P2)(2) pentameric complex, in which P0 function as a base structure for incorporating the stalk onto 60S pre-ribosome. Prior studies have suggested that P0 genes are indispensable for survival in yeast and animals. However, the functions of P0 genes in plants remain elusive. RESULTS: In the present study, we show that rice has three P0 genes predicted to encode highly conserved proteins OsP0A, OsP0B and OsP0C. All of these P0 proteins were localized both in cytoplasm and nucleus, and all interacted with OsP1. Intriguingly, the transcripts of OsP0A presented more than 90% of the total P0 transcripts. Moreover, knockout of OsP0A led to embryo lethality, while single or double knockout of OsP0B and OsP0C did not show any visible defects in rice. The genomic DNA of OsP0A could well complement the lethal phenotypes of osp0a mutant. Finally, sequence and syntenic analyses revealed that OsP0C evolved from OsP0A, and that duplication of genomic fragment harboring OsP0C further gave birth to OsP0B, and both of these duplication events might happen prior to the differentiation of indica and japonica subspecies in rice ancestor. CONCLUSION: These data suggested that OsP0A functions as the predominant P0 gene, playing an essential role in embryo development in rice. Our findings highlighted the importance of P0 genes in plant development. SUPPLEMENTARY INFORMATION: The online version contains supplementary material available at 10.1186/s12870-023-04445-y. BioMed Central 2023-10-05 /pmc/articles/PMC10552409/ /pubmed/37798654 http://dx.doi.org/10.1186/s12870-023-04445-y Text en © The Author(s) 2023 https://creativecommons.org/licenses/by/4.0/Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) . The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/ (https://creativecommons.org/publicdomain/zero/1.0/) ) applies to the data made available in this article, unless otherwise stated in a credit line to the data.
spellingShingle Research
Chang, Zhenyi
Wang, Xia
Pan, Xiaoying
Yan, Wei
Wu, Wenshi
zhuang, Yi
Li, Zhiai
Wang, Dan
Yuan, Shuting
Xu, Chunjue
Chen, Zhufeng
Liu, Dongfeng
Chen, Zi Sheng
Tang, Xiaoyan
Wu, Jianxin
The ribosomal protein P0A is required for embryo development in rice
title The ribosomal protein P0A is required for embryo development in rice
title_full The ribosomal protein P0A is required for embryo development in rice
title_fullStr The ribosomal protein P0A is required for embryo development in rice
title_full_unstemmed The ribosomal protein P0A is required for embryo development in rice
title_short The ribosomal protein P0A is required for embryo development in rice
title_sort ribosomal protein p0a is required for embryo development in rice
topic Research
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10552409/
https://www.ncbi.nlm.nih.gov/pubmed/37798654
http://dx.doi.org/10.1186/s12870-023-04445-y
work_keys_str_mv AT changzhenyi theribosomalproteinp0aisrequiredforembryodevelopmentinrice
AT wangxia theribosomalproteinp0aisrequiredforembryodevelopmentinrice
AT panxiaoying theribosomalproteinp0aisrequiredforembryodevelopmentinrice
AT yanwei theribosomalproteinp0aisrequiredforembryodevelopmentinrice
AT wuwenshi theribosomalproteinp0aisrequiredforembryodevelopmentinrice
AT zhuangyi theribosomalproteinp0aisrequiredforembryodevelopmentinrice
AT lizhiai theribosomalproteinp0aisrequiredforembryodevelopmentinrice
AT wangdan theribosomalproteinp0aisrequiredforembryodevelopmentinrice
AT yuanshuting theribosomalproteinp0aisrequiredforembryodevelopmentinrice
AT xuchunjue theribosomalproteinp0aisrequiredforembryodevelopmentinrice
AT chenzhufeng theribosomalproteinp0aisrequiredforembryodevelopmentinrice
AT liudongfeng theribosomalproteinp0aisrequiredforembryodevelopmentinrice
AT chenzisheng theribosomalproteinp0aisrequiredforembryodevelopmentinrice
AT tangxiaoyan theribosomalproteinp0aisrequiredforembryodevelopmentinrice
AT wujianxin theribosomalproteinp0aisrequiredforembryodevelopmentinrice
AT changzhenyi ribosomalproteinp0aisrequiredforembryodevelopmentinrice
AT wangxia ribosomalproteinp0aisrequiredforembryodevelopmentinrice
AT panxiaoying ribosomalproteinp0aisrequiredforembryodevelopmentinrice
AT yanwei ribosomalproteinp0aisrequiredforembryodevelopmentinrice
AT wuwenshi ribosomalproteinp0aisrequiredforembryodevelopmentinrice
AT zhuangyi ribosomalproteinp0aisrequiredforembryodevelopmentinrice
AT lizhiai ribosomalproteinp0aisrequiredforembryodevelopmentinrice
AT wangdan ribosomalproteinp0aisrequiredforembryodevelopmentinrice
AT yuanshuting ribosomalproteinp0aisrequiredforembryodevelopmentinrice
AT xuchunjue ribosomalproteinp0aisrequiredforembryodevelopmentinrice
AT chenzhufeng ribosomalproteinp0aisrequiredforembryodevelopmentinrice
AT liudongfeng ribosomalproteinp0aisrequiredforembryodevelopmentinrice
AT chenzisheng ribosomalproteinp0aisrequiredforembryodevelopmentinrice
AT tangxiaoyan ribosomalproteinp0aisrequiredforembryodevelopmentinrice
AT wujianxin ribosomalproteinp0aisrequiredforembryodevelopmentinrice