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Ambidexterity and Left-Handedness Induced by Geminally Disubstituted γ Amino Acid Residues in Chiral 3(10) Helices

[Image: see text] Chirality is an omnipresent feature in nature’s architecture starting from simple molecules like amino acids to complex higher-order structures viz. proteins, DNA, and RNA. The L configuration of proteinogenic amino acids gives rise to right-handed helices. Ambidexterity is as rare...

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Autores principales: Debnath, Swapna, Rajalakshmi, Vignesh Shanmugam, Kumar, Dinesh, Das, Babulal, Vasudev, Prema G., Satpati, Priyadarshi, Chatterjee, Sunanda
Formato: Online Artículo Texto
Lenguaje:English
Publicado: American Chemical Society 2023
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10552473/
https://www.ncbi.nlm.nih.gov/pubmed/37810672
http://dx.doi.org/10.1021/acsomega.3c05124
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author Debnath, Swapna
Rajalakshmi, Vignesh Shanmugam
Kumar, Dinesh
Das, Babulal
Vasudev, Prema G.
Satpati, Priyadarshi
Chatterjee, Sunanda
author_facet Debnath, Swapna
Rajalakshmi, Vignesh Shanmugam
Kumar, Dinesh
Das, Babulal
Vasudev, Prema G.
Satpati, Priyadarshi
Chatterjee, Sunanda
author_sort Debnath, Swapna
collection PubMed
description [Image: see text] Chirality is an omnipresent feature in nature’s architecture starting from simple molecules like amino acids to complex higher-order structures viz. proteins, DNA, and RNA. The L configuration of proteinogenic amino acids gives rise to right-handed helices. Ambidexterity is as rare in organisms as in molecules. There are only a few reports of ambidexterity in single-peptide molecules composed of either mixed L and D or achiral residues. Here, we report, for the first time, the ambidextrous and left-handed helical conformations in the chiral nonapeptides P1–P3 (Boc-LUVUγ(x,x)ULUV-OMe where U = Aib, x,x = 2,2/3,3/4,4), containing chiral L α amino acid residues, in addition to the usually observed right-handed helical conformation. The centrally located achiral γ residue, capable of adopting both left and right-handed helical conformations, induces its handedness on the neighboring chiral and achiral residues, leading to the observation of both left and right-handed helices in P2 and P3. The presence of a single water molecule proximal to the γ residue induces the reversal of helix handedness by forming distinct and stable water-mediated hydrogen bonds. This gives rise to ambidextrous helices as major conformers in P1 and P2. The absence of the observation of ambidexterity in P3 might be due to the inability of γ(4,4) in the recruitment of a water molecule. Experiments (NMR, X-ray, and CD) and density functional theory (DFT) calculations suggest that the position of geminal disubstitution is crucial for determining the population of the amenable helical conformations (ambidextrous, left and right-handed) in these chiral peptides.
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spelling pubmed-105524732023-10-06 Ambidexterity and Left-Handedness Induced by Geminally Disubstituted γ Amino Acid Residues in Chiral 3(10) Helices Debnath, Swapna Rajalakshmi, Vignesh Shanmugam Kumar, Dinesh Das, Babulal Vasudev, Prema G. Satpati, Priyadarshi Chatterjee, Sunanda ACS Omega [Image: see text] Chirality is an omnipresent feature in nature’s architecture starting from simple molecules like amino acids to complex higher-order structures viz. proteins, DNA, and RNA. The L configuration of proteinogenic amino acids gives rise to right-handed helices. Ambidexterity is as rare in organisms as in molecules. There are only a few reports of ambidexterity in single-peptide molecules composed of either mixed L and D or achiral residues. Here, we report, for the first time, the ambidextrous and left-handed helical conformations in the chiral nonapeptides P1–P3 (Boc-LUVUγ(x,x)ULUV-OMe where U = Aib, x,x = 2,2/3,3/4,4), containing chiral L α amino acid residues, in addition to the usually observed right-handed helical conformation. The centrally located achiral γ residue, capable of adopting both left and right-handed helical conformations, induces its handedness on the neighboring chiral and achiral residues, leading to the observation of both left and right-handed helices in P2 and P3. The presence of a single water molecule proximal to the γ residue induces the reversal of helix handedness by forming distinct and stable water-mediated hydrogen bonds. This gives rise to ambidextrous helices as major conformers in P1 and P2. The absence of the observation of ambidexterity in P3 might be due to the inability of γ(4,4) in the recruitment of a water molecule. Experiments (NMR, X-ray, and CD) and density functional theory (DFT) calculations suggest that the position of geminal disubstitution is crucial for determining the population of the amenable helical conformations (ambidextrous, left and right-handed) in these chiral peptides. American Chemical Society 2023-09-21 /pmc/articles/PMC10552473/ /pubmed/37810672 http://dx.doi.org/10.1021/acsomega.3c05124 Text en © 2023 The Authors. Published by American Chemical Society https://creativecommons.org/licenses/by-nc-nd/4.0/Permits non-commercial access and re-use, provided that author attribution and integrity are maintained; but does not permit creation of adaptations or other derivative works (https://creativecommons.org/licenses/by-nc-nd/4.0/).
spellingShingle Debnath, Swapna
Rajalakshmi, Vignesh Shanmugam
Kumar, Dinesh
Das, Babulal
Vasudev, Prema G.
Satpati, Priyadarshi
Chatterjee, Sunanda
Ambidexterity and Left-Handedness Induced by Geminally Disubstituted γ Amino Acid Residues in Chiral 3(10) Helices
title Ambidexterity and Left-Handedness Induced by Geminally Disubstituted γ Amino Acid Residues in Chiral 3(10) Helices
title_full Ambidexterity and Left-Handedness Induced by Geminally Disubstituted γ Amino Acid Residues in Chiral 3(10) Helices
title_fullStr Ambidexterity and Left-Handedness Induced by Geminally Disubstituted γ Amino Acid Residues in Chiral 3(10) Helices
title_full_unstemmed Ambidexterity and Left-Handedness Induced by Geminally Disubstituted γ Amino Acid Residues in Chiral 3(10) Helices
title_short Ambidexterity and Left-Handedness Induced by Geminally Disubstituted γ Amino Acid Residues in Chiral 3(10) Helices
title_sort ambidexterity and left-handedness induced by geminally disubstituted γ amino acid residues in chiral 3(10) helices
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10552473/
https://www.ncbi.nlm.nih.gov/pubmed/37810672
http://dx.doi.org/10.1021/acsomega.3c05124
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