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Genome-wide identification and characterization of ABA receptor pyrabactin resistance 1-like protein (PYL) family in oat

Abscisic acid (ABA) is a phytohormone that plays an important role in plant growth and development. Meanwhile, ABA also plays a key role in the plant response to abiotic stressors such as drought and high salinity. The pyrabactin resistance 1-like (PYR/PYL) protein family of ABA receptors is involve...

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Autores principales: Mi, Wenbo, Liu, Kaiqiang, Liang, Guoling, Jia, Zhifeng, Ma, Xiang, Ju, Zeliang, Liu, Wenhui
Formato: Online Artículo Texto
Lenguaje:English
Publicado: PeerJ Inc. 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10552766/
https://www.ncbi.nlm.nih.gov/pubmed/37810776
http://dx.doi.org/10.7717/peerj.16181
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author Mi, Wenbo
Liu, Kaiqiang
Liang, Guoling
Jia, Zhifeng
Ma, Xiang
Ju, Zeliang
Liu, Wenhui
author_facet Mi, Wenbo
Liu, Kaiqiang
Liang, Guoling
Jia, Zhifeng
Ma, Xiang
Ju, Zeliang
Liu, Wenhui
author_sort Mi, Wenbo
collection PubMed
description Abscisic acid (ABA) is a phytohormone that plays an important role in plant growth and development. Meanwhile, ABA also plays a key role in the plant response to abiotic stressors such as drought and high salinity. The pyrabactin resistance 1-like (PYR/PYL) protein family of ABA receptors is involved in the initial step of ABA signal transduction. However, no systematic studies of the PYL family in “Avena sativa, a genus Avena in the grass family Poaceae,” have been conducted to date. Thus, in this study, we performed a genome-wide screening to identify PYL genes in oat and characterized their responses to drought stress. A total of 12 AsPYL genes distributed on nine chromosomes were identified. The phylogenetic analysis divided these AsPYLs into three subfamilies, based on structural and functional similarities. Gene and motif structure analysis of AsPYLs revealed that members of each subfamily share similar gene and motif structure. Segmental duplication appears to be the driving force for the expansion of PYLs, Furthermore, stress-responsive AsPYLs were detected through RNA-seq analysis. The qRT-PCR analysis of 10 AsPYL genes under drought, salt, and ABA stress revealed that AsPYL genes play an important role in stress response. These data provide a reference for further studies on the oat PYL gene family and its function.
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spelling pubmed-105527662023-10-06 Genome-wide identification and characterization of ABA receptor pyrabactin resistance 1-like protein (PYL) family in oat Mi, Wenbo Liu, Kaiqiang Liang, Guoling Jia, Zhifeng Ma, Xiang Ju, Zeliang Liu, Wenhui PeerJ Agricultural Science Abscisic acid (ABA) is a phytohormone that plays an important role in plant growth and development. Meanwhile, ABA also plays a key role in the plant response to abiotic stressors such as drought and high salinity. The pyrabactin resistance 1-like (PYR/PYL) protein family of ABA receptors is involved in the initial step of ABA signal transduction. However, no systematic studies of the PYL family in “Avena sativa, a genus Avena in the grass family Poaceae,” have been conducted to date. Thus, in this study, we performed a genome-wide screening to identify PYL genes in oat and characterized their responses to drought stress. A total of 12 AsPYL genes distributed on nine chromosomes were identified. The phylogenetic analysis divided these AsPYLs into three subfamilies, based on structural and functional similarities. Gene and motif structure analysis of AsPYLs revealed that members of each subfamily share similar gene and motif structure. Segmental duplication appears to be the driving force for the expansion of PYLs, Furthermore, stress-responsive AsPYLs were detected through RNA-seq analysis. The qRT-PCR analysis of 10 AsPYL genes under drought, salt, and ABA stress revealed that AsPYL genes play an important role in stress response. These data provide a reference for further studies on the oat PYL gene family and its function. PeerJ Inc. 2023-10-02 /pmc/articles/PMC10552766/ /pubmed/37810776 http://dx.doi.org/10.7717/peerj.16181 Text en © 2023 Mi et al. https://creativecommons.org/licenses/by/4.0/This is an open access article distributed under the terms of the Creative Commons Attribution License (https://creativecommons.org/licenses/by/4.0/) , which permits unrestricted use, distribution, reproduction and adaptation in any medium and for any purpose provided that it is properly attributed. For attribution, the original author(s), title, publication source (PeerJ) and either DOI or URL of the article must be cited.
spellingShingle Agricultural Science
Mi, Wenbo
Liu, Kaiqiang
Liang, Guoling
Jia, Zhifeng
Ma, Xiang
Ju, Zeliang
Liu, Wenhui
Genome-wide identification and characterization of ABA receptor pyrabactin resistance 1-like protein (PYL) family in oat
title Genome-wide identification and characterization of ABA receptor pyrabactin resistance 1-like protein (PYL) family in oat
title_full Genome-wide identification and characterization of ABA receptor pyrabactin resistance 1-like protein (PYL) family in oat
title_fullStr Genome-wide identification and characterization of ABA receptor pyrabactin resistance 1-like protein (PYL) family in oat
title_full_unstemmed Genome-wide identification and characterization of ABA receptor pyrabactin resistance 1-like protein (PYL) family in oat
title_short Genome-wide identification and characterization of ABA receptor pyrabactin resistance 1-like protein (PYL) family in oat
title_sort genome-wide identification and characterization of aba receptor pyrabactin resistance 1-like protein (pyl) family in oat
topic Agricultural Science
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10552766/
https://www.ncbi.nlm.nih.gov/pubmed/37810776
http://dx.doi.org/10.7717/peerj.16181
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