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Generating MCMC proposals by randomly rotating the regular simplex
We present the simplicial sampler, a class of parallel MCMC methods that generate and choose from multiple proposals at each iteration. The algorithm’s multiproposal randomly rotates a simplex connected to the current Markov chain state in a way that inherently preserves symmetry between proposals....
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Formato: | Online Artículo Texto |
Lenguaje: | English |
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2023
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Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10553364/ https://www.ncbi.nlm.nih.gov/pubmed/37799825 http://dx.doi.org/10.1016/j.jmva.2022.105106 |
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author | Holbrook, Andrew J. |
author_facet | Holbrook, Andrew J. |
author_sort | Holbrook, Andrew J. |
collection | PubMed |
description | We present the simplicial sampler, a class of parallel MCMC methods that generate and choose from multiple proposals at each iteration. The algorithm’s multiproposal randomly rotates a simplex connected to the current Markov chain state in a way that inherently preserves symmetry between proposals. As a result, the simplicial sampler leads to a simplified acceptance step: it simply chooses from among the simplex nodes with probability proportional to their target density values. We also investigate a multivariate Gaussian-based symmetric multiproposal mechanism and prove that it also enjoys the same simplified acceptance step. This insight leads to significant theoretical and practical speedups. While both algorithms enjoy natural parallelizability, we show that conventional implementations are sufficient to confer efficiency gains across an array of dimensions and a number of target distributions. |
format | Online Article Text |
id | pubmed-10553364 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2023 |
record_format | MEDLINE/PubMed |
spelling | pubmed-105533642023-10-05 Generating MCMC proposals by randomly rotating the regular simplex Holbrook, Andrew J. J Multivar Anal Article We present the simplicial sampler, a class of parallel MCMC methods that generate and choose from multiple proposals at each iteration. The algorithm’s multiproposal randomly rotates a simplex connected to the current Markov chain state in a way that inherently preserves symmetry between proposals. As a result, the simplicial sampler leads to a simplified acceptance step: it simply chooses from among the simplex nodes with probability proportional to their target density values. We also investigate a multivariate Gaussian-based symmetric multiproposal mechanism and prove that it also enjoys the same simplified acceptance step. This insight leads to significant theoretical and practical speedups. While both algorithms enjoy natural parallelizability, we show that conventional implementations are sufficient to confer efficiency gains across an array of dimensions and a number of target distributions. 2023-03 2022-09-23 /pmc/articles/PMC10553364/ /pubmed/37799825 http://dx.doi.org/10.1016/j.jmva.2022.105106 Text en https://creativecommons.org/licenses/by-nc-nd/4.0/This is an open access article under the CC BY-NC-ND license (http://creativecommons.org/licenses/by-nc-nd/4.0/ (https://creativecommons.org/licenses/by-nc-nd/4.0/) ). |
spellingShingle | Article Holbrook, Andrew J. Generating MCMC proposals by randomly rotating the regular simplex |
title | Generating MCMC proposals by randomly rotating the regular simplex |
title_full | Generating MCMC proposals by randomly rotating the regular simplex |
title_fullStr | Generating MCMC proposals by randomly rotating the regular simplex |
title_full_unstemmed | Generating MCMC proposals by randomly rotating the regular simplex |
title_short | Generating MCMC proposals by randomly rotating the regular simplex |
title_sort | generating mcmc proposals by randomly rotating the regular simplex |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10553364/ https://www.ncbi.nlm.nih.gov/pubmed/37799825 http://dx.doi.org/10.1016/j.jmva.2022.105106 |
work_keys_str_mv | AT holbrookandrewj generatingmcmcproposalsbyrandomlyrotatingtheregularsimplex |