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THU271 Identification Of Candidate Biomarkers For Type 1 Diabetes Mellitus By Bioinformatics Analysis Of Pooled Microarray Gene Expression Datasets In Gene Expression Omnibus
Disclosure: K. Feng: None. W. Chen: None. Background: Type 1 diabetes (T1DM) is a serious threat to childhood life and has a complicated pathogenesis. Currently, molecular mechanisms of T1DM remain largely unclear. The aim of this study was to identify the candidate genes in T1DM by integrated bioin...
Autores principales: | , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Oxford University Press
2023
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10553491/ http://dx.doi.org/10.1210/jendso/bvad114.707 |
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author | Feng, Kevin Chen, Wenqiang |
author_facet | Feng, Kevin Chen, Wenqiang |
author_sort | Feng, Kevin |
collection | PubMed |
description | Disclosure: K. Feng: None. W. Chen: None. Background: Type 1 diabetes (T1DM) is a serious threat to childhood life and has a complicated pathogenesis. Currently, molecular mechanisms of T1DM remain largely unclear. The aim of this study was to identify the candidate genes in T1DM by integrated bioinformatics analysis. Methods: Transcriptomic datasets (GSE156035) in the GEO database were analyzed for differentially expressed genes (DEGs) using the R statistical language. The differentially expressed genes (DEGs) were identified, and the Gene Ontology (GO) and the Kyoto Encyclopedia of Genes and Genomes (KEGG) pathway enrichment analyses were performed. A protein - protein interaction (PPI) network was applied to screen out the candidate genes. Results: The results revealed that 273 DEGs of the three datasets were ascertained in our study, including 135 upregulated genes and 138 downregulated genes. The GO and KEGG enrichment analysis results showed that the functions of DEGs mainly involved in regulation of transcription from RNA polymerase II promoter, specific granule lumen, transcriptional activator activity, Osteoclast differentiation pathway, etc. Through the PPI analysis network, the core genes with the highest degree of 6 nodes were selected: FOS, RHOA, CXCL8, FOSB, EGR1, and DUSP1. Conclusion: The genes, identified in this study, may play a vital regulatory role in the occurrence and development of T1DM. Also, they are closely related to obesity and diabetes mellitus. Our results provide novel biomarkers that could be used as representative reference indicators or potential therapeutic targets for T1DM clinical applications. Presentation: Thursday, June 15, 2023 |
format | Online Article Text |
id | pubmed-10553491 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2023 |
publisher | Oxford University Press |
record_format | MEDLINE/PubMed |
spelling | pubmed-105534912023-10-06 THU271 Identification Of Candidate Biomarkers For Type 1 Diabetes Mellitus By Bioinformatics Analysis Of Pooled Microarray Gene Expression Datasets In Gene Expression Omnibus Feng, Kevin Chen, Wenqiang J Endocr Soc Diabetes And Glucose Metabolism Disclosure: K. Feng: None. W. Chen: None. Background: Type 1 diabetes (T1DM) is a serious threat to childhood life and has a complicated pathogenesis. Currently, molecular mechanisms of T1DM remain largely unclear. The aim of this study was to identify the candidate genes in T1DM by integrated bioinformatics analysis. Methods: Transcriptomic datasets (GSE156035) in the GEO database were analyzed for differentially expressed genes (DEGs) using the R statistical language. The differentially expressed genes (DEGs) were identified, and the Gene Ontology (GO) and the Kyoto Encyclopedia of Genes and Genomes (KEGG) pathway enrichment analyses were performed. A protein - protein interaction (PPI) network was applied to screen out the candidate genes. Results: The results revealed that 273 DEGs of the three datasets were ascertained in our study, including 135 upregulated genes and 138 downregulated genes. The GO and KEGG enrichment analysis results showed that the functions of DEGs mainly involved in regulation of transcription from RNA polymerase II promoter, specific granule lumen, transcriptional activator activity, Osteoclast differentiation pathway, etc. Through the PPI analysis network, the core genes with the highest degree of 6 nodes were selected: FOS, RHOA, CXCL8, FOSB, EGR1, and DUSP1. Conclusion: The genes, identified in this study, may play a vital regulatory role in the occurrence and development of T1DM. Also, they are closely related to obesity and diabetes mellitus. Our results provide novel biomarkers that could be used as representative reference indicators or potential therapeutic targets for T1DM clinical applications. Presentation: Thursday, June 15, 2023 Oxford University Press 2023-10-05 /pmc/articles/PMC10553491/ http://dx.doi.org/10.1210/jendso/bvad114.707 Text en © The Author(s) 2023. Published by Oxford University Press on behalf of the Endocrine Society. https://creativecommons.org/licenses/by-nc-nd/4.0/This is an Open Access article distributed under the terms of the Creative Commons Attribution-NonCommercial-NoDerivs licence (https://creativecommons.org/licenses/by-nc-nd/4.0/), which permits non-commercial reproduction and distribution of the work, in any medium, provided the original work is not altered or transformed in any way, and that the work is properly cited. For commercial re-use, please contact journals.permissions@oup.com |
spellingShingle | Diabetes And Glucose Metabolism Feng, Kevin Chen, Wenqiang THU271 Identification Of Candidate Biomarkers For Type 1 Diabetes Mellitus By Bioinformatics Analysis Of Pooled Microarray Gene Expression Datasets In Gene Expression Omnibus |
title | THU271 Identification Of Candidate Biomarkers For Type 1 Diabetes Mellitus By Bioinformatics Analysis Of Pooled Microarray Gene Expression Datasets In Gene Expression Omnibus |
title_full | THU271 Identification Of Candidate Biomarkers For Type 1 Diabetes Mellitus By Bioinformatics Analysis Of Pooled Microarray Gene Expression Datasets In Gene Expression Omnibus |
title_fullStr | THU271 Identification Of Candidate Biomarkers For Type 1 Diabetes Mellitus By Bioinformatics Analysis Of Pooled Microarray Gene Expression Datasets In Gene Expression Omnibus |
title_full_unstemmed | THU271 Identification Of Candidate Biomarkers For Type 1 Diabetes Mellitus By Bioinformatics Analysis Of Pooled Microarray Gene Expression Datasets In Gene Expression Omnibus |
title_short | THU271 Identification Of Candidate Biomarkers For Type 1 Diabetes Mellitus By Bioinformatics Analysis Of Pooled Microarray Gene Expression Datasets In Gene Expression Omnibus |
title_sort | thu271 identification of candidate biomarkers for type 1 diabetes mellitus by bioinformatics analysis of pooled microarray gene expression datasets in gene expression omnibus |
topic | Diabetes And Glucose Metabolism |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10553491/ http://dx.doi.org/10.1210/jendso/bvad114.707 |
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