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OR07-02 Single-nucleus RNA-seq Studies In Human White Adipose Tissue Reveal Novel Adipocyte Subtypes And TSHZ3 As A Transcriptional Regulator Of Adipogenesis
Disclosure: V. Efthymiou: None. S.D. Kodani: None. A. Gupta: None. F. Shamsi: None. W. Ali: None. L. Poulos: None. A. Streets: None. Y. Tseng: None. M. Patti: Consulting Fee; Self; AstraZeneca, MBX-Biosciences, Hanmi Pharmaceutical. Other; Self; DSMB: Fractyl Health, Inc. Background and aim: White a...
Autores principales: | , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Oxford University Press
2023
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10554518/ http://dx.doi.org/10.1210/jendso/bvad114.004 |
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author | Efthymiou, Vissarion Kodani, Sean David Gupta, Anushka Shamsi, Farnaz Ali, Waqar Poulos, Lindsay Streets, Aaron Tseng, Yu-Hua Patti, Mary-Elizabeth |
author_facet | Efthymiou, Vissarion Kodani, Sean David Gupta, Anushka Shamsi, Farnaz Ali, Waqar Poulos, Lindsay Streets, Aaron Tseng, Yu-Hua Patti, Mary-Elizabeth |
author_sort | Efthymiou, Vissarion |
collection | PubMed |
description | Disclosure: V. Efthymiou: None. S.D. Kodani: None. A. Gupta: None. F. Shamsi: None. W. Ali: None. L. Poulos: None. A. Streets: None. Y. Tseng: None. M. Patti: Consulting Fee; Self; AstraZeneca, MBX-Biosciences, Hanmi Pharmaceutical. Other; Self; DSMB: Fractyl Health, Inc. Background and aim: White adipose tissue (WAT) is characterized by substantial functional and cellular heterogeneity, which may contribute to depot-dependent differences in risk for type 2 diabetes (T2D). Methods: We isolated nuclei from human subcutaneous (SAT) and intraabdominal (IAT) adipose biopsies obtained during abdominal surgery for single-nucleus RNA sequencing (snucRNA-seq), and applied scVI and VISION to integrate and analyze data. Additionally, we used siRNA-mediated knockdown to validate candidate transcriptional regulators in human adipogenic progenitor cells. Results: We analyzed the transcriptome of 117,717 high-quality nuclei from 22 biopsies (10 SAT, 12 IAT, 3 paired from same subject) obtained from 16 females and 3 males, with or without T2D, with BMI 45.4±10.3 kg/m(2) (range 23.6-60.9). Both SAT and IAT depots had substantial cellular heterogeneity with 17 distinct clusters of adipose and non-adipose cell types. Distinct clusters of adipocytes were distinguished by high vs. low adiponectin expression (ADIPOQ(hi) vs. ADIPOQ(lo)). Adipose samples from males and participants with T2D had a higher proportion of ADIPOQ(lo) adipocytes. ADIPOQ(lo) adipocytes have distinct expression patterns, including upregulation of transcriptional regulators NR4A1 and ATF3, previously linked to adipose metabolic dysfunction.We utilized CheA3 analyses to identify transcription factors predicted to regulate genes differentially expressed between ADIPOQ(lo) vs. ADIPOQ(hi). Among upstream regulators of ADIPOQ(lo) gene expression was TSHZ3, a zinc-finger transcription factor previously linked to developmental processes. In our dataset, TSHZ3 is expressed in adipogenic progenitors and is downregulated during differentiation ex vivo. To test the role of TSHZ3 in adipogenic differentiation, we performed siRNA-mediated knockdown in a human subcutaneous white adipogenic progenitor cell line. TSHZ3 knockdown dramatically reduced adipogenesis vs. scrambled control, with reduction in lipid droplets and significant downregulation of adiponectin, leptin, CIDEA, AP2, FAS, PPARγ, and PGC1α. This effect was partially rescued by the PPARγ agonist rosiglitazone. Conclusion and perspectives: Our single-nucleus analysis reveals two distinct subtypes of mature adipocytes: ADIPOQ(hi) vs. ADIPOQ(lo). We identify TSHZ3 as a key transcriptional regulator of adipogenesis which may contribute to differences in expression phenotypes between these populations. Overall, integrative bioinformatics analysis reveals distinct transcriptomic signatures between depots, between clusters, and across a range of BMI, that may be promising targets for understanding mechanisms by which specific adipose-resident cell populations mediate metabolic risk. Presentation: Thursday, June 15, 2023 |
format | Online Article Text |
id | pubmed-10554518 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2023 |
publisher | Oxford University Press |
record_format | MEDLINE/PubMed |
spelling | pubmed-105545182023-10-06 OR07-02 Single-nucleus RNA-seq Studies In Human White Adipose Tissue Reveal Novel Adipocyte Subtypes And TSHZ3 As A Transcriptional Regulator Of Adipogenesis Efthymiou, Vissarion Kodani, Sean David Gupta, Anushka Shamsi, Farnaz Ali, Waqar Poulos, Lindsay Streets, Aaron Tseng, Yu-Hua Patti, Mary-Elizabeth J Endocr Soc Adipose Tissue, Appetite, & Obesity Disclosure: V. Efthymiou: None. S.D. Kodani: None. A. Gupta: None. F. Shamsi: None. W. Ali: None. L. Poulos: None. A. Streets: None. Y. Tseng: None. M. Patti: Consulting Fee; Self; AstraZeneca, MBX-Biosciences, Hanmi Pharmaceutical. Other; Self; DSMB: Fractyl Health, Inc. Background and aim: White adipose tissue (WAT) is characterized by substantial functional and cellular heterogeneity, which may contribute to depot-dependent differences in risk for type 2 diabetes (T2D). Methods: We isolated nuclei from human subcutaneous (SAT) and intraabdominal (IAT) adipose biopsies obtained during abdominal surgery for single-nucleus RNA sequencing (snucRNA-seq), and applied scVI and VISION to integrate and analyze data. Additionally, we used siRNA-mediated knockdown to validate candidate transcriptional regulators in human adipogenic progenitor cells. Results: We analyzed the transcriptome of 117,717 high-quality nuclei from 22 biopsies (10 SAT, 12 IAT, 3 paired from same subject) obtained from 16 females and 3 males, with or without T2D, with BMI 45.4±10.3 kg/m(2) (range 23.6-60.9). Both SAT and IAT depots had substantial cellular heterogeneity with 17 distinct clusters of adipose and non-adipose cell types. Distinct clusters of adipocytes were distinguished by high vs. low adiponectin expression (ADIPOQ(hi) vs. ADIPOQ(lo)). Adipose samples from males and participants with T2D had a higher proportion of ADIPOQ(lo) adipocytes. ADIPOQ(lo) adipocytes have distinct expression patterns, including upregulation of transcriptional regulators NR4A1 and ATF3, previously linked to adipose metabolic dysfunction.We utilized CheA3 analyses to identify transcription factors predicted to regulate genes differentially expressed between ADIPOQ(lo) vs. ADIPOQ(hi). Among upstream regulators of ADIPOQ(lo) gene expression was TSHZ3, a zinc-finger transcription factor previously linked to developmental processes. In our dataset, TSHZ3 is expressed in adipogenic progenitors and is downregulated during differentiation ex vivo. To test the role of TSHZ3 in adipogenic differentiation, we performed siRNA-mediated knockdown in a human subcutaneous white adipogenic progenitor cell line. TSHZ3 knockdown dramatically reduced adipogenesis vs. scrambled control, with reduction in lipid droplets and significant downregulation of adiponectin, leptin, CIDEA, AP2, FAS, PPARγ, and PGC1α. This effect was partially rescued by the PPARγ agonist rosiglitazone. Conclusion and perspectives: Our single-nucleus analysis reveals two distinct subtypes of mature adipocytes: ADIPOQ(hi) vs. ADIPOQ(lo). We identify TSHZ3 as a key transcriptional regulator of adipogenesis which may contribute to differences in expression phenotypes between these populations. Overall, integrative bioinformatics analysis reveals distinct transcriptomic signatures between depots, between clusters, and across a range of BMI, that may be promising targets for understanding mechanisms by which specific adipose-resident cell populations mediate metabolic risk. Presentation: Thursday, June 15, 2023 Oxford University Press 2023-10-05 /pmc/articles/PMC10554518/ http://dx.doi.org/10.1210/jendso/bvad114.004 Text en © The Author(s) 2023. Published by Oxford University Press on behalf of the Endocrine Society. https://creativecommons.org/licenses/by-nc-nd/4.0/This is an Open Access article distributed under the terms of the Creative Commons Attribution-NonCommercial-NoDerivs licence (https://creativecommons.org/licenses/by-nc-nd/4.0/), which permits non-commercial reproduction and distribution of the work, in any medium, provided the original work is not altered or transformed in any way, and that the work is properly cited. For commercial re-use, please contact journals.permissions@oup.com |
spellingShingle | Adipose Tissue, Appetite, & Obesity Efthymiou, Vissarion Kodani, Sean David Gupta, Anushka Shamsi, Farnaz Ali, Waqar Poulos, Lindsay Streets, Aaron Tseng, Yu-Hua Patti, Mary-Elizabeth OR07-02 Single-nucleus RNA-seq Studies In Human White Adipose Tissue Reveal Novel Adipocyte Subtypes And TSHZ3 As A Transcriptional Regulator Of Adipogenesis |
title | OR07-02 Single-nucleus RNA-seq Studies In Human White Adipose Tissue Reveal Novel Adipocyte Subtypes And TSHZ3 As A Transcriptional Regulator Of Adipogenesis |
title_full | OR07-02 Single-nucleus RNA-seq Studies In Human White Adipose Tissue Reveal Novel Adipocyte Subtypes And TSHZ3 As A Transcriptional Regulator Of Adipogenesis |
title_fullStr | OR07-02 Single-nucleus RNA-seq Studies In Human White Adipose Tissue Reveal Novel Adipocyte Subtypes And TSHZ3 As A Transcriptional Regulator Of Adipogenesis |
title_full_unstemmed | OR07-02 Single-nucleus RNA-seq Studies In Human White Adipose Tissue Reveal Novel Adipocyte Subtypes And TSHZ3 As A Transcriptional Regulator Of Adipogenesis |
title_short | OR07-02 Single-nucleus RNA-seq Studies In Human White Adipose Tissue Reveal Novel Adipocyte Subtypes And TSHZ3 As A Transcriptional Regulator Of Adipogenesis |
title_sort | or07-02 single-nucleus rna-seq studies in human white adipose tissue reveal novel adipocyte subtypes and tshz3 as a transcriptional regulator of adipogenesis |
topic | Adipose Tissue, Appetite, & Obesity |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10554518/ http://dx.doi.org/10.1210/jendso/bvad114.004 |
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