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A universal mechanism of biomass density homeostasis via ribosomal counterions

In all growing cells, the cell envelope must expand in concert with cytoplasmic biomass to prevent lysis or molecular crowding. The complex cell wall of microbes and plants makes this challenge especially daunting and it unclear how cells achieve this coordination. Here, we uncover a striking linear...

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Autores principales: Mukherjee, Avik, Huang, Yanqing, Oh, Seungeun, Sanchez, Carlos, Chang, Yu-Fang, Liu, Xili, Bradshaw, Gary Andrew, Benites, Nina Catherine, Paulsson, Johan, Kirschner, Marc W., Sung, Yongjin, Elgeti, Jens, Basan, Markus
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Cold Spring Harbor Laboratory 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10557573/
https://www.ncbi.nlm.nih.gov/pubmed/37808635
http://dx.doi.org/10.1101/2023.08.31.555748
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author Mukherjee, Avik
Huang, Yanqing
Oh, Seungeun
Sanchez, Carlos
Chang, Yu-Fang
Liu, Xili
Bradshaw, Gary Andrew
Benites, Nina Catherine
Paulsson, Johan
Kirschner, Marc W.
Sung, Yongjin
Elgeti, Jens
Basan, Markus
author_facet Mukherjee, Avik
Huang, Yanqing
Oh, Seungeun
Sanchez, Carlos
Chang, Yu-Fang
Liu, Xili
Bradshaw, Gary Andrew
Benites, Nina Catherine
Paulsson, Johan
Kirschner, Marc W.
Sung, Yongjin
Elgeti, Jens
Basan, Markus
author_sort Mukherjee, Avik
collection PubMed
description In all growing cells, the cell envelope must expand in concert with cytoplasmic biomass to prevent lysis or molecular crowding. The complex cell wall of microbes and plants makes this challenge especially daunting and it unclear how cells achieve this coordination. Here, we uncover a striking linear increase of cytoplasmic pressure with growth rate in E. coli. Remarkably, despite this increase in turgor pressure with growth rate, cellular biomass density was constant across a wide range of growth rates. In contrast, perturbing pressure away from this scaling directly affected biomass density. A mathematical model, in which endopeptidase-mediated cell wall fluidization enables turgor pressure to set the pace of cellular volume expansion, not only explains these confounding observations, but makes several surprising quantitative predictions that we validated experimentally. The picture that emerges is that changes in turgor pressure across growth rates are mediated by counterions of ribosomal RNA. Profoundly, the coupling between rRNA and cytoplasmic pressure simultaneously coordinates cell wall expansion across growth rates and exerts homeostatic feedback control on biomass density. Because ribosome content universally scales with growth rate in fast growing cells, this universal mechanism may control cell wall biosynthesis in microbes and plants and drive the expansion of ribosome-addicted tumors that can exert substantial mechanical forces on their environment.
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spelling pubmed-105575732023-10-07 A universal mechanism of biomass density homeostasis via ribosomal counterions Mukherjee, Avik Huang, Yanqing Oh, Seungeun Sanchez, Carlos Chang, Yu-Fang Liu, Xili Bradshaw, Gary Andrew Benites, Nina Catherine Paulsson, Johan Kirschner, Marc W. Sung, Yongjin Elgeti, Jens Basan, Markus bioRxiv Article In all growing cells, the cell envelope must expand in concert with cytoplasmic biomass to prevent lysis or molecular crowding. The complex cell wall of microbes and plants makes this challenge especially daunting and it unclear how cells achieve this coordination. Here, we uncover a striking linear increase of cytoplasmic pressure with growth rate in E. coli. Remarkably, despite this increase in turgor pressure with growth rate, cellular biomass density was constant across a wide range of growth rates. In contrast, perturbing pressure away from this scaling directly affected biomass density. A mathematical model, in which endopeptidase-mediated cell wall fluidization enables turgor pressure to set the pace of cellular volume expansion, not only explains these confounding observations, but makes several surprising quantitative predictions that we validated experimentally. The picture that emerges is that changes in turgor pressure across growth rates are mediated by counterions of ribosomal RNA. Profoundly, the coupling between rRNA and cytoplasmic pressure simultaneously coordinates cell wall expansion across growth rates and exerts homeostatic feedback control on biomass density. Because ribosome content universally scales with growth rate in fast growing cells, this universal mechanism may control cell wall biosynthesis in microbes and plants and drive the expansion of ribosome-addicted tumors that can exert substantial mechanical forces on their environment. Cold Spring Harbor Laboratory 2023-11-02 /pmc/articles/PMC10557573/ /pubmed/37808635 http://dx.doi.org/10.1101/2023.08.31.555748 Text en https://creativecommons.org/licenses/by-nc-nd/4.0/This work is licensed under a Creative Commons Attribution-NonCommercial-NoDerivatives 4.0 International License (https://creativecommons.org/licenses/by-nc-nd/4.0/) , which allows reusers to copy and distribute the material in any medium or format in unadapted form only, for noncommercial purposes only, and only so long as attribution is given to the creator.
spellingShingle Article
Mukherjee, Avik
Huang, Yanqing
Oh, Seungeun
Sanchez, Carlos
Chang, Yu-Fang
Liu, Xili
Bradshaw, Gary Andrew
Benites, Nina Catherine
Paulsson, Johan
Kirschner, Marc W.
Sung, Yongjin
Elgeti, Jens
Basan, Markus
A universal mechanism of biomass density homeostasis via ribosomal counterions
title A universal mechanism of biomass density homeostasis via ribosomal counterions
title_full A universal mechanism of biomass density homeostasis via ribosomal counterions
title_fullStr A universal mechanism of biomass density homeostasis via ribosomal counterions
title_full_unstemmed A universal mechanism of biomass density homeostasis via ribosomal counterions
title_short A universal mechanism of biomass density homeostasis via ribosomal counterions
title_sort universal mechanism of biomass density homeostasis via ribosomal counterions
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10557573/
https://www.ncbi.nlm.nih.gov/pubmed/37808635
http://dx.doi.org/10.1101/2023.08.31.555748
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