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BioXTAS RAW 2: new developments for a free open-source program for small angle scattering data reduction and analysis
BioXTAS RAW is a free, open-source program for reduction, analysis and modelling of biological small angle scattering data. Here, the new developments in RAW version 2 are described. These include: improved data reduction using pyFAI; updated automated Guinier fitting and D(max) finding algorithms;...
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Formato: | Online Artículo Texto |
Lenguaje: | English |
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Cold Spring Harbor Laboratory
2023
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Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10557611/ https://www.ncbi.nlm.nih.gov/pubmed/37808703 http://dx.doi.org/10.1101/2023.09.25.559353 |
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author | Hopkins, Jesse B. |
author_facet | Hopkins, Jesse B. |
author_sort | Hopkins, Jesse B. |
collection | PubMed |
description | BioXTAS RAW is a free, open-source program for reduction, analysis and modelling of biological small angle scattering data. Here, the new developments in RAW version 2 are described. These include: improved data reduction using pyFAI; updated automated Guinier fitting and D(max) finding algorithms; automated series (e.g. SEC-SAXS) buffer and sample region finding algorithms; linear and integral baseline correction for series; deconvolution of series data using REGALS; creation of electron density reconstructions via DENSS; a comparison window showing residuals, ratios, and statistical comparisons between profiles; and generation of PDF reports with summary plots and tables for all analysis. In addition, there is now a RAW API, which can be used without the GUI providing full access to all of the functionality found in the GUI. In addition to these new capabilities, RAW has undergone significant technical updates, such as adding Python 3 compatibility, and has entirely new documentation available both online and in the program. |
format | Online Article Text |
id | pubmed-10557611 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2023 |
publisher | Cold Spring Harbor Laboratory |
record_format | MEDLINE/PubMed |
spelling | pubmed-105576112023-10-07 BioXTAS RAW 2: new developments for a free open-source program for small angle scattering data reduction and analysis Hopkins, Jesse B. bioRxiv Article BioXTAS RAW is a free, open-source program for reduction, analysis and modelling of biological small angle scattering data. Here, the new developments in RAW version 2 are described. These include: improved data reduction using pyFAI; updated automated Guinier fitting and D(max) finding algorithms; automated series (e.g. SEC-SAXS) buffer and sample region finding algorithms; linear and integral baseline correction for series; deconvolution of series data using REGALS; creation of electron density reconstructions via DENSS; a comparison window showing residuals, ratios, and statistical comparisons between profiles; and generation of PDF reports with summary plots and tables for all analysis. In addition, there is now a RAW API, which can be used without the GUI providing full access to all of the functionality found in the GUI. In addition to these new capabilities, RAW has undergone significant technical updates, such as adding Python 3 compatibility, and has entirely new documentation available both online and in the program. Cold Spring Harbor Laboratory 2023-09-26 /pmc/articles/PMC10557611/ /pubmed/37808703 http://dx.doi.org/10.1101/2023.09.25.559353 Text en https://creativecommons.org/licenses/by-nd/4.0/This work is licensed under a Creative Commons Attribution-NoDerivatives 4.0 International License (https://creativecommons.org/licenses/by-nd/4.0/) , which allows reusers to copy and distribute the material in any medium or format in unadapted form only, and only so long as attribution is given to the creator. The license allows for commercial use. |
spellingShingle | Article Hopkins, Jesse B. BioXTAS RAW 2: new developments for a free open-source program for small angle scattering data reduction and analysis |
title | BioXTAS RAW 2: new developments for a free open-source program for small angle scattering data reduction and analysis |
title_full | BioXTAS RAW 2: new developments for a free open-source program for small angle scattering data reduction and analysis |
title_fullStr | BioXTAS RAW 2: new developments for a free open-source program for small angle scattering data reduction and analysis |
title_full_unstemmed | BioXTAS RAW 2: new developments for a free open-source program for small angle scattering data reduction and analysis |
title_short | BioXTAS RAW 2: new developments for a free open-source program for small angle scattering data reduction and analysis |
title_sort | bioxtas raw 2: new developments for a free open-source program for small angle scattering data reduction and analysis |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10557611/ https://www.ncbi.nlm.nih.gov/pubmed/37808703 http://dx.doi.org/10.1101/2023.09.25.559353 |
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