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Nucleolar dynamics are determined by the ordered assembly of the ribosome

Ribosome biogenesis is coordinated within the nucleolus, a biomolecular condensate that exhibits dynamic material properties that are thought to be important for nucleolar function. However, the relationship between ribosome assembly and nucleolar dynamics is not clear. Here, we screened 364 genes i...

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Autores principales: Sheu-Gruttadauria, Jessica, Yan, Xiaowei, Stuurman, Nico, Floor, Stephen N., Vale, Ronald D.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Cold Spring Harbor Laboratory 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10557630/
https://www.ncbi.nlm.nih.gov/pubmed/37808656
http://dx.doi.org/10.1101/2023.09.26.559432
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author Sheu-Gruttadauria, Jessica
Yan, Xiaowei
Stuurman, Nico
Floor, Stephen N.
Vale, Ronald D.
author_facet Sheu-Gruttadauria, Jessica
Yan, Xiaowei
Stuurman, Nico
Floor, Stephen N.
Vale, Ronald D.
author_sort Sheu-Gruttadauria, Jessica
collection PubMed
description Ribosome biogenesis is coordinated within the nucleolus, a biomolecular condensate that exhibits dynamic material properties that are thought to be important for nucleolar function. However, the relationship between ribosome assembly and nucleolar dynamics is not clear. Here, we screened 364 genes involved in ribosome biogenesis and RNA metabolism for their impact on dynamics of the nucleolus, as measured by automated, high-throughput fluorescence recovery after photobleaching (FRAP) of the nucleolar scaffold protein NPM1. This screen revealed that gene knockdowns that caused accumulation of early rRNA intermediates were associated with nucleolar rigidification, while accumulation of late intermediates led to increased fluidity. These shifts in dynamics were accompanied by distinct changes in nucleolar morphology. We also found that genes involved in mRNA processing impact nucleolar dynamics, revealing connections between ribosome biogenesis and other RNA processing pathways. Together, this work defines mechanistic ties between ribosome assembly and the biophysical features of the nucleolus, while establishing a toolbox for understanding how molecular dynamics impact function across other biomolecular condensates.
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spelling pubmed-105576302023-10-07 Nucleolar dynamics are determined by the ordered assembly of the ribosome Sheu-Gruttadauria, Jessica Yan, Xiaowei Stuurman, Nico Floor, Stephen N. Vale, Ronald D. bioRxiv Article Ribosome biogenesis is coordinated within the nucleolus, a biomolecular condensate that exhibits dynamic material properties that are thought to be important for nucleolar function. However, the relationship between ribosome assembly and nucleolar dynamics is not clear. Here, we screened 364 genes involved in ribosome biogenesis and RNA metabolism for their impact on dynamics of the nucleolus, as measured by automated, high-throughput fluorescence recovery after photobleaching (FRAP) of the nucleolar scaffold protein NPM1. This screen revealed that gene knockdowns that caused accumulation of early rRNA intermediates were associated with nucleolar rigidification, while accumulation of late intermediates led to increased fluidity. These shifts in dynamics were accompanied by distinct changes in nucleolar morphology. We also found that genes involved in mRNA processing impact nucleolar dynamics, revealing connections between ribosome biogenesis and other RNA processing pathways. Together, this work defines mechanistic ties between ribosome assembly and the biophysical features of the nucleolus, while establishing a toolbox for understanding how molecular dynamics impact function across other biomolecular condensates. Cold Spring Harbor Laboratory 2023-09-27 /pmc/articles/PMC10557630/ /pubmed/37808656 http://dx.doi.org/10.1101/2023.09.26.559432 Text en https://creativecommons.org/licenses/by-nc-nd/4.0/This work is licensed under a Creative Commons Attribution-NonCommercial-NoDerivatives 4.0 International License (https://creativecommons.org/licenses/by-nc-nd/4.0/) , which allows reusers to copy and distribute the material in any medium or format in unadapted form only, for noncommercial purposes only, and only so long as attribution is given to the creator.
spellingShingle Article
Sheu-Gruttadauria, Jessica
Yan, Xiaowei
Stuurman, Nico
Floor, Stephen N.
Vale, Ronald D.
Nucleolar dynamics are determined by the ordered assembly of the ribosome
title Nucleolar dynamics are determined by the ordered assembly of the ribosome
title_full Nucleolar dynamics are determined by the ordered assembly of the ribosome
title_fullStr Nucleolar dynamics are determined by the ordered assembly of the ribosome
title_full_unstemmed Nucleolar dynamics are determined by the ordered assembly of the ribosome
title_short Nucleolar dynamics are determined by the ordered assembly of the ribosome
title_sort nucleolar dynamics are determined by the ordered assembly of the ribosome
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10557630/
https://www.ncbi.nlm.nih.gov/pubmed/37808656
http://dx.doi.org/10.1101/2023.09.26.559432
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