Cargando…

HybriSeq: Probe-based Device-free Single-cell RNA Profiling

We have developed the HybriSeq method for single-cell RNA profiling, which utilizes in situ hybridization of multiple probes for targeted transcripts, followed by split-pool barcoding and sequencing analysis of the probes. We have shown that HybriSeq can achieve high sensitivity for RNA detection wi...

Descripción completa

Detalles Bibliográficos
Autores principales:	Foyt, Daniel, Brown, David, Zhou, Shuqin, Huang, Bo
Formato:	Online Artículo Texto
Lenguaje:	English
Publicado:	Cold Spring Harbor Laboratory 2023
Materias:	Article
Acceso en línea:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10557710/ https://www.ncbi.nlm.nih.gov/pubmed/37808850 http://dx.doi.org/10.1101/2023.09.27.559406

Ejemplares similares

HybriFree: a robust and rapid method for the development of monoclonal antibodies from different host species
por: Kivi, Gaily, et al.
Publicado: (2016)

HYBRiD: a simple method for clearing and visualizing mammalian bodies
Publicado: (2022)

HybriD-GM: A Framework for Quantum Computing Simulation Targeted to Hybrid Parallel Architectures
por: Avila, Anderson, et al.
Publicado: (2023)

HybriDC: A Resource-Efficient CPU-FPGA Heterogeneous Acceleration System for Lossless Data Compression
por: Liu, Puguang, et al.
Publicado: (2022)

FlsnRNA-seq: protoplasting-free full-length single-nucleus RNA profiling in plants
por: Long, Yanping, et al.
Publicado: (2021)

Genotype-free demultiplexing of pooled single-cell RNA-seq
por: Xu, Jun, et al.
Publicado: (2019)

Probing regenerative heterogeneity of corticospinal neurons with scRNA-Seq
por: Kim, Hugo, et al.
Publicado: (2023)

Systematic comparison of high-throughput single-cell RNA-seq methods for immune cell profiling
por: Yamawaki, Tracy M., et al.
Publicado: (2021)

SINCERA: A Pipeline for Single-Cell RNA-Seq Profiling Analysis
por: Guo, Minzhe, et al.
Publicado: (2015)

Detection of high variability in gene expression from single-cell RNA-seq profiling
por: Chen, Hung-I Harry, et al.
Publicado: (2016)

A deep generative model for multi-view profiling of single-cell RNA-seq and ATAC-seq data
por: Li, Gaoyang, et al.
Publicado: (2022)

Probe-Seq enables transcriptional profiling of specific cell types from heterogeneous tissue by RNA-based isolation
por: Amamoto, Ryoji, et al.
Publicado: (2019)

Assessment of Single Cell RNA-Seq Normalization Methods
por: Ding, Bo, et al.
Publicado: (2017)

Mod-seq: high-throughput sequencing for chemical probing of RNA structure
por: Talkish, Jason, et al.
Publicado: (2014)

Probing Xist RNA Structure in Cells Using Targeted Structure-Seq
por: Fang, Rui, et al.
Publicado: (2015)

Massively parallel RNA device engineering in mammalian cells with RNA-Seq
por: Xiang, Joy S., et al.
Publicado: (2019)

Methods, Challenges and Potentials of Single Cell RNA-seq
por: Hebenstreit, Daniel
Publicado: (2012)

SCRABBLE: single-cell RNA-seq imputation constrained by bulk RNA-seq data
por: Peng, Tao, et al.
Publicado: (2019)

Massively-parallel single nucleus RNA-seq with DroNc-seq
por: Habib, Naomi, et al.
Publicado: (2017)

Integrating single-cell RNA-seq and imaging with SCOPE-seq2
por: Liu, Zhouzerui, et al.
Publicado: (2020)

The Advances of Single-Cell RNA-Seq in Kidney Immunology
por: Zeng, Honghui, et al.
Publicado: (2021)

Probe Region Expression Estimation for RNA-Seq Data for Improved Microarray Comparability
por: Uziela, Karolis, et al.
Publicado: (2015)

Single-nuclei RNA-seq on human retinal tissue provides improved transcriptome profiling
por: Liang, Qingnan, et al.
Publicado: (2019)

Differential expression profile of gluten-specific T cells identified by single-cell RNA-seq
por: Yao, Ying, et al.
Publicado: (2021)

CEL-Seq2: sensitive highly-multiplexed single-cell RNA-Seq
por: Hashimshony, Tamar, et al.
Publicado: (2016)

Transforming L1000 profiles to RNA-seq-like profiles with deep learning
por: Jeon, Minji, et al.
Publicado: (2022)

scAPAmod: Profiling Alternative Polyadenylation Modalities in Single Cells from Single-Cell RNA-Seq Data
por: Qian, Lingwu, et al.
Publicado: (2022)

RNA-seq analysis of single bovine blastocysts
por: Chitwood, James L, et al.
Publicado: (2013)

Epi-Impute: Single-Cell RNA-seq Imputation via Integration with Single-Cell ATAC-seq
por: Raevskiy, Mikhail, et al.
Publicado: (2023)

Limitations of alignment-free tools in total RNA-seq quantification
por: Wu, Douglas C., et al.
Publicado: (2018)

Integrative Single-Cell RNA-Seq and ATAC-Seq Analysis of Mouse Corneal Epithelial Cells
por: Lu, Zhao-Jing, et al.
Publicado: (2023)

Single-cell RNA-seq reveals dynamic transcriptome profiling in human early neural differentiation
por: Shang, Zhouchun, et al.
Publicado: (2018)

Mutational landscape of canine B-cell lymphoma profiled at single nucleotide resolution by RNA-seq
por: Giannuzzi, Diana, et al.
Publicado: (2019)

Deep generative model embedding of single-cell RNA-Seq profiles on hyperspheres and hyperbolic spaces
por: Ding, Jiarui, et al.
Publicado: (2021)

Correction: Differential expression profile of gluten-specific T cells identified by single-cell RNA-seq
Publicado: (2022)

Molecular profiling of human non-small cell lung cancer by single-cell RNA-seq
por: Li, Qingqing, et al.
Publicado: (2022)

FragSeq: transcriptome-wide RNA structure probing using high-throughput sequencing
por: Underwood, Jason G., et al.
Publicado: (2010)

An Efficient and Flexible Method for Deconvoluting Bulk RNA-Seq Data with Single-Cell RNA-Seq Data
por: Sun, Xifang, et al.
Publicado: (2019)

Comparative Toxicotranscriptomics of Single Cell RNA-Seq and Conventional RNA-Seq in TCDD-Exposed Testicular Tissue
por: Haimbaugh, Alex, et al.
Publicado: (2022)

BingleSeq: a user-friendly R package for bulk and single-cell RNA-Seq data analysis
por: Dimitrov, Daniel, et al.
Publicado: (2020)

Cannot write session to /tmp/vufind_sessions/sess_ulffmq55h6qqdk9oed8attu3n8