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Cell type-specific gene expression dynamics during human brain maturation

The human brain undergoes protracted post-natal maturation, guided by dynamic changes in gene expression. To date, studies exploring these processes have used bulk tissue analyses, which mask cell type-specific gene expression dynamics. Here, using single nucleus (sn)RNA-Sseq on temporal lobe tissue...

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Autores principales: Steyn, Christina, Mishi, Ruvimbo, Fillmore, Stephanie, Verhoog, Matthijs B., More, Jessica, Rohlwink, Ursula K., Melvill, Roger, Butler, James, Enslin, Johannes M. N., Jacobs, Muazzam, Quiñones, Sadi, Dulla, Chris G., Raimondo, Joseph V., Figaji, Anthony, Hockman, Dorit
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Cold Spring Harbor Laboratory 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10557738/
https://www.ncbi.nlm.nih.gov/pubmed/37808657
http://dx.doi.org/10.1101/2023.09.29.560114
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author Steyn, Christina
Mishi, Ruvimbo
Fillmore, Stephanie
Verhoog, Matthijs B.
More, Jessica
Rohlwink, Ursula K.
Melvill, Roger
Butler, James
Enslin, Johannes M. N.
Jacobs, Muazzam
Quiñones, Sadi
Dulla, Chris G.
Raimondo, Joseph V.
Figaji, Anthony
Hockman, Dorit
author_facet Steyn, Christina
Mishi, Ruvimbo
Fillmore, Stephanie
Verhoog, Matthijs B.
More, Jessica
Rohlwink, Ursula K.
Melvill, Roger
Butler, James
Enslin, Johannes M. N.
Jacobs, Muazzam
Quiñones, Sadi
Dulla, Chris G.
Raimondo, Joseph V.
Figaji, Anthony
Hockman, Dorit
author_sort Steyn, Christina
collection PubMed
description The human brain undergoes protracted post-natal maturation, guided by dynamic changes in gene expression. To date, studies exploring these processes have used bulk tissue analyses, which mask cell type-specific gene expression dynamics. Here, using single nucleus (sn)RNA-Sseq on temporal lobe tissue, including samples of African ancestry, we build a joint paediatric and adult atlas of 54 cell subtypes, which we verify with spatial transcriptomics. We explore the differences in cell states between paediatric and adult cell types, revealing the genes and pathways that change during brain maturation. Our results highlight excitatory neuron subtypes, including the LTK and FREM subtypes, that show elevated expression of genes associated with cognition and synaptic plasticity in paediatric tissue. The new resources we present here improve our understanding of the brain during a critical period of its development and contribute to global efforts to build an inclusive cell map of the brain.
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spelling pubmed-105577382023-10-07 Cell type-specific gene expression dynamics during human brain maturation Steyn, Christina Mishi, Ruvimbo Fillmore, Stephanie Verhoog, Matthijs B. More, Jessica Rohlwink, Ursula K. Melvill, Roger Butler, James Enslin, Johannes M. N. Jacobs, Muazzam Quiñones, Sadi Dulla, Chris G. Raimondo, Joseph V. Figaji, Anthony Hockman, Dorit bioRxiv Article The human brain undergoes protracted post-natal maturation, guided by dynamic changes in gene expression. To date, studies exploring these processes have used bulk tissue analyses, which mask cell type-specific gene expression dynamics. Here, using single nucleus (sn)RNA-Sseq on temporal lobe tissue, including samples of African ancestry, we build a joint paediatric and adult atlas of 54 cell subtypes, which we verify with spatial transcriptomics. We explore the differences in cell states between paediatric and adult cell types, revealing the genes and pathways that change during brain maturation. Our results highlight excitatory neuron subtypes, including the LTK and FREM subtypes, that show elevated expression of genes associated with cognition and synaptic plasticity in paediatric tissue. The new resources we present here improve our understanding of the brain during a critical period of its development and contribute to global efforts to build an inclusive cell map of the brain. Cold Spring Harbor Laboratory 2023-09-29 /pmc/articles/PMC10557738/ /pubmed/37808657 http://dx.doi.org/10.1101/2023.09.29.560114 Text en https://creativecommons.org/licenses/by-nc-nd/4.0/This work is licensed under a Creative Commons Attribution-NonCommercial-NoDerivatives 4.0 International License (https://creativecommons.org/licenses/by-nc-nd/4.0/) , which allows reusers to copy and distribute the material in any medium or format in unadapted form only, for noncommercial purposes only, and only so long as attribution is given to the creator.
spellingShingle Article
Steyn, Christina
Mishi, Ruvimbo
Fillmore, Stephanie
Verhoog, Matthijs B.
More, Jessica
Rohlwink, Ursula K.
Melvill, Roger
Butler, James
Enslin, Johannes M. N.
Jacobs, Muazzam
Quiñones, Sadi
Dulla, Chris G.
Raimondo, Joseph V.
Figaji, Anthony
Hockman, Dorit
Cell type-specific gene expression dynamics during human brain maturation
title Cell type-specific gene expression dynamics during human brain maturation
title_full Cell type-specific gene expression dynamics during human brain maturation
title_fullStr Cell type-specific gene expression dynamics during human brain maturation
title_full_unstemmed Cell type-specific gene expression dynamics during human brain maturation
title_short Cell type-specific gene expression dynamics during human brain maturation
title_sort cell type-specific gene expression dynamics during human brain maturation
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10557738/
https://www.ncbi.nlm.nih.gov/pubmed/37808657
http://dx.doi.org/10.1101/2023.09.29.560114
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