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Cell type-specific gene expression dynamics during human brain maturation
The human brain undergoes protracted post-natal maturation, guided by dynamic changes in gene expression. To date, studies exploring these processes have used bulk tissue analyses, which mask cell type-specific gene expression dynamics. Here, using single nucleus (sn)RNA-Sseq on temporal lobe tissue...
Autores principales: | , , , , , , , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Cold Spring Harbor Laboratory
2023
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10557738/ https://www.ncbi.nlm.nih.gov/pubmed/37808657 http://dx.doi.org/10.1101/2023.09.29.560114 |
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author | Steyn, Christina Mishi, Ruvimbo Fillmore, Stephanie Verhoog, Matthijs B. More, Jessica Rohlwink, Ursula K. Melvill, Roger Butler, James Enslin, Johannes M. N. Jacobs, Muazzam Quiñones, Sadi Dulla, Chris G. Raimondo, Joseph V. Figaji, Anthony Hockman, Dorit |
author_facet | Steyn, Christina Mishi, Ruvimbo Fillmore, Stephanie Verhoog, Matthijs B. More, Jessica Rohlwink, Ursula K. Melvill, Roger Butler, James Enslin, Johannes M. N. Jacobs, Muazzam Quiñones, Sadi Dulla, Chris G. Raimondo, Joseph V. Figaji, Anthony Hockman, Dorit |
author_sort | Steyn, Christina |
collection | PubMed |
description | The human brain undergoes protracted post-natal maturation, guided by dynamic changes in gene expression. To date, studies exploring these processes have used bulk tissue analyses, which mask cell type-specific gene expression dynamics. Here, using single nucleus (sn)RNA-Sseq on temporal lobe tissue, including samples of African ancestry, we build a joint paediatric and adult atlas of 54 cell subtypes, which we verify with spatial transcriptomics. We explore the differences in cell states between paediatric and adult cell types, revealing the genes and pathways that change during brain maturation. Our results highlight excitatory neuron subtypes, including the LTK and FREM subtypes, that show elevated expression of genes associated with cognition and synaptic plasticity in paediatric tissue. The new resources we present here improve our understanding of the brain during a critical period of its development and contribute to global efforts to build an inclusive cell map of the brain. |
format | Online Article Text |
id | pubmed-10557738 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2023 |
publisher | Cold Spring Harbor Laboratory |
record_format | MEDLINE/PubMed |
spelling | pubmed-105577382023-10-07 Cell type-specific gene expression dynamics during human brain maturation Steyn, Christina Mishi, Ruvimbo Fillmore, Stephanie Verhoog, Matthijs B. More, Jessica Rohlwink, Ursula K. Melvill, Roger Butler, James Enslin, Johannes M. N. Jacobs, Muazzam Quiñones, Sadi Dulla, Chris G. Raimondo, Joseph V. Figaji, Anthony Hockman, Dorit bioRxiv Article The human brain undergoes protracted post-natal maturation, guided by dynamic changes in gene expression. To date, studies exploring these processes have used bulk tissue analyses, which mask cell type-specific gene expression dynamics. Here, using single nucleus (sn)RNA-Sseq on temporal lobe tissue, including samples of African ancestry, we build a joint paediatric and adult atlas of 54 cell subtypes, which we verify with spatial transcriptomics. We explore the differences in cell states between paediatric and adult cell types, revealing the genes and pathways that change during brain maturation. Our results highlight excitatory neuron subtypes, including the LTK and FREM subtypes, that show elevated expression of genes associated with cognition and synaptic plasticity in paediatric tissue. The new resources we present here improve our understanding of the brain during a critical period of its development and contribute to global efforts to build an inclusive cell map of the brain. Cold Spring Harbor Laboratory 2023-09-29 /pmc/articles/PMC10557738/ /pubmed/37808657 http://dx.doi.org/10.1101/2023.09.29.560114 Text en https://creativecommons.org/licenses/by-nc-nd/4.0/This work is licensed under a Creative Commons Attribution-NonCommercial-NoDerivatives 4.0 International License (https://creativecommons.org/licenses/by-nc-nd/4.0/) , which allows reusers to copy and distribute the material in any medium or format in unadapted form only, for noncommercial purposes only, and only so long as attribution is given to the creator. |
spellingShingle | Article Steyn, Christina Mishi, Ruvimbo Fillmore, Stephanie Verhoog, Matthijs B. More, Jessica Rohlwink, Ursula K. Melvill, Roger Butler, James Enslin, Johannes M. N. Jacobs, Muazzam Quiñones, Sadi Dulla, Chris G. Raimondo, Joseph V. Figaji, Anthony Hockman, Dorit Cell type-specific gene expression dynamics during human brain maturation |
title | Cell type-specific gene expression dynamics during human brain maturation |
title_full | Cell type-specific gene expression dynamics during human brain maturation |
title_fullStr | Cell type-specific gene expression dynamics during human brain maturation |
title_full_unstemmed | Cell type-specific gene expression dynamics during human brain maturation |
title_short | Cell type-specific gene expression dynamics during human brain maturation |
title_sort | cell type-specific gene expression dynamics during human brain maturation |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10557738/ https://www.ncbi.nlm.nih.gov/pubmed/37808657 http://dx.doi.org/10.1101/2023.09.29.560114 |
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