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Disease-driven domain generalization for neuroimaging-based assessment of Alzheimer’s disease

Development of deep learning models to assess the degree of cognitive impairment on magnetic resonance imaging (MRI) scans has high translational significance. Performance of such models is often affected by potential variabilities stemming from independent protocols for data generation, imaging equ...

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Autores principales: Lteif, Diala, Sreerama, Sandeep, Bargal, Sarah A., Plummer, Bryan A., Au, Rhoda, Kolachalama, Vijaya B.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Cold Spring Harbor Laboratory 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10557812/
https://www.ncbi.nlm.nih.gov/pubmed/37808872
http://dx.doi.org/10.1101/2023.09.22.23295984
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author Lteif, Diala
Sreerama, Sandeep
Bargal, Sarah A.
Plummer, Bryan A.
Au, Rhoda
Kolachalama, Vijaya B.
author_facet Lteif, Diala
Sreerama, Sandeep
Bargal, Sarah A.
Plummer, Bryan A.
Au, Rhoda
Kolachalama, Vijaya B.
author_sort Lteif, Diala
collection PubMed
description Development of deep learning models to assess the degree of cognitive impairment on magnetic resonance imaging (MRI) scans has high translational significance. Performance of such models is often affected by potential variabilities stemming from independent protocols for data generation, imaging equipment, radiology artifacts, and demographic distributional shifts. Domain generalization (DG) frameworks have the potential to overcome these issues by learning signal from one or more source domains that can be transferable to unseen target domains. We developed an approach that leverages model interpretability as a means to improve generalizability of classification models across multiple cohorts. Using MRI scans and clinical diagnosis obtained from four independent cohorts (Alzheimer’s Disease Neuroimaging Initiative (ADNI, n = 1,821), the Framingham Heart Study (FHS, n = 304), the Australian Imaging Biomarkers and Lifestyle Study of Ageing (AIBL, n = 661), and the National Alzheimer’s Coordinating Center (NACC, n = 4,647)), we trained a deep neural network that used model-identified regions of disease relevance to inform model training. We trained a classifier to distinguish persons with normal cognition (NC) from those with mild cognitive impairment (MCI) and Alzheimer’s disease (AD) by aligning class-wise attention with a unified visual saliency prior computed offline per class over all training data. Our proposed method competes with state-of-the-art methods with improved correlation with postmortem histology, thus grounding our findings with gold standard evidence and paving a way towards validating DG frameworks.
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spelling pubmed-105578122023-10-07 Disease-driven domain generalization for neuroimaging-based assessment of Alzheimer’s disease Lteif, Diala Sreerama, Sandeep Bargal, Sarah A. Plummer, Bryan A. Au, Rhoda Kolachalama, Vijaya B. medRxiv Article Development of deep learning models to assess the degree of cognitive impairment on magnetic resonance imaging (MRI) scans has high translational significance. Performance of such models is often affected by potential variabilities stemming from independent protocols for data generation, imaging equipment, radiology artifacts, and demographic distributional shifts. Domain generalization (DG) frameworks have the potential to overcome these issues by learning signal from one or more source domains that can be transferable to unseen target domains. We developed an approach that leverages model interpretability as a means to improve generalizability of classification models across multiple cohorts. Using MRI scans and clinical diagnosis obtained from four independent cohorts (Alzheimer’s Disease Neuroimaging Initiative (ADNI, n = 1,821), the Framingham Heart Study (FHS, n = 304), the Australian Imaging Biomarkers and Lifestyle Study of Ageing (AIBL, n = 661), and the National Alzheimer’s Coordinating Center (NACC, n = 4,647)), we trained a deep neural network that used model-identified regions of disease relevance to inform model training. We trained a classifier to distinguish persons with normal cognition (NC) from those with mild cognitive impairment (MCI) and Alzheimer’s disease (AD) by aligning class-wise attention with a unified visual saliency prior computed offline per class over all training data. Our proposed method competes with state-of-the-art methods with improved correlation with postmortem histology, thus grounding our findings with gold standard evidence and paving a way towards validating DG frameworks. Cold Spring Harbor Laboratory 2023-09-25 /pmc/articles/PMC10557812/ /pubmed/37808872 http://dx.doi.org/10.1101/2023.09.22.23295984 Text en https://creativecommons.org/licenses/by/4.0/This work is licensed under a Creative Commons Attribution 4.0 International License (https://creativecommons.org/licenses/by/4.0/) , which allows reusers to distribute, remix, adapt, and build upon the material in any medium or format, so long as attribution is given to the creator. The license allows for commercial use.
spellingShingle Article
Lteif, Diala
Sreerama, Sandeep
Bargal, Sarah A.
Plummer, Bryan A.
Au, Rhoda
Kolachalama, Vijaya B.
Disease-driven domain generalization for neuroimaging-based assessment of Alzheimer’s disease
title Disease-driven domain generalization for neuroimaging-based assessment of Alzheimer’s disease
title_full Disease-driven domain generalization for neuroimaging-based assessment of Alzheimer’s disease
title_fullStr Disease-driven domain generalization for neuroimaging-based assessment of Alzheimer’s disease
title_full_unstemmed Disease-driven domain generalization for neuroimaging-based assessment of Alzheimer’s disease
title_short Disease-driven domain generalization for neuroimaging-based assessment of Alzheimer’s disease
title_sort disease-driven domain generalization for neuroimaging-based assessment of alzheimer’s disease
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10557812/
https://www.ncbi.nlm.nih.gov/pubmed/37808872
http://dx.doi.org/10.1101/2023.09.22.23295984
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