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The importance of interpreting machine learning models for blood glucose prediction in diabetes: an analysis using SHAP

Machine learning has become a popular tool for learning models of complex dynamics from biomedical data. In Type 1 Diabetes (T1D) management, these models are increasingly been integrated in decision support systems (DSS) to forecast glucose levels and provide preventive therapeutic suggestions, lik...

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Autores principales: Prendin, Francesco, Pavan, Jacopo, Cappon, Giacomo, Del Favero, Simone, Sparacino, Giovanni, Facchinetti, Andrea
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Nature Publishing Group UK 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10558434/
https://www.ncbi.nlm.nih.gov/pubmed/37803177
http://dx.doi.org/10.1038/s41598-023-44155-x
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author Prendin, Francesco
Pavan, Jacopo
Cappon, Giacomo
Del Favero, Simone
Sparacino, Giovanni
Facchinetti, Andrea
author_facet Prendin, Francesco
Pavan, Jacopo
Cappon, Giacomo
Del Favero, Simone
Sparacino, Giovanni
Facchinetti, Andrea
author_sort Prendin, Francesco
collection PubMed
description Machine learning has become a popular tool for learning models of complex dynamics from biomedical data. In Type 1 Diabetes (T1D) management, these models are increasingly been integrated in decision support systems (DSS) to forecast glucose levels and provide preventive therapeutic suggestions, like corrective insulin boluses (CIB), accordingly. Typically, models are chosen based on their prediction accuracy. However, since patient safety is a concern in this application, the algorithm should also be physiologically sound and its outcome should be explainable. This paper aims to discuss the importance of using tools to interpret the output of black-box models in T1D management by presenting a case-of-study on the selection of the best prediction algorithm to integrate in a DSS for CIB suggestion. By retrospectively “replaying” real patient data, we show that two long-short term memory neural networks (LSTM) (named p-LSTM and np-LSTM) with similar prediction accuracy could lead to different therapeutic decisions. An analysis with SHAP—a tool for explaining black-box models’ output—unambiguously shows that only p-LSTM learnt the physiological relationship between inputs and glucose prediction, and should therefore be preferred. This is verified by showing that, when embedded in the DSS, only p-LSTM can improve patients’ glycemic control.
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spelling pubmed-105584342023-10-08 The importance of interpreting machine learning models for blood glucose prediction in diabetes: an analysis using SHAP Prendin, Francesco Pavan, Jacopo Cappon, Giacomo Del Favero, Simone Sparacino, Giovanni Facchinetti, Andrea Sci Rep Article Machine learning has become a popular tool for learning models of complex dynamics from biomedical data. In Type 1 Diabetes (T1D) management, these models are increasingly been integrated in decision support systems (DSS) to forecast glucose levels and provide preventive therapeutic suggestions, like corrective insulin boluses (CIB), accordingly. Typically, models are chosen based on their prediction accuracy. However, since patient safety is a concern in this application, the algorithm should also be physiologically sound and its outcome should be explainable. This paper aims to discuss the importance of using tools to interpret the output of black-box models in T1D management by presenting a case-of-study on the selection of the best prediction algorithm to integrate in a DSS for CIB suggestion. By retrospectively “replaying” real patient data, we show that two long-short term memory neural networks (LSTM) (named p-LSTM and np-LSTM) with similar prediction accuracy could lead to different therapeutic decisions. An analysis with SHAP—a tool for explaining black-box models’ output—unambiguously shows that only p-LSTM learnt the physiological relationship between inputs and glucose prediction, and should therefore be preferred. This is verified by showing that, when embedded in the DSS, only p-LSTM can improve patients’ glycemic control. Nature Publishing Group UK 2023-10-06 /pmc/articles/PMC10558434/ /pubmed/37803177 http://dx.doi.org/10.1038/s41598-023-44155-x Text en © The Author(s) 2023 https://creativecommons.org/licenses/by/4.0/Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) .
spellingShingle Article
Prendin, Francesco
Pavan, Jacopo
Cappon, Giacomo
Del Favero, Simone
Sparacino, Giovanni
Facchinetti, Andrea
The importance of interpreting machine learning models for blood glucose prediction in diabetes: an analysis using SHAP
title The importance of interpreting machine learning models for blood glucose prediction in diabetes: an analysis using SHAP
title_full The importance of interpreting machine learning models for blood glucose prediction in diabetes: an analysis using SHAP
title_fullStr The importance of interpreting machine learning models for blood glucose prediction in diabetes: an analysis using SHAP
title_full_unstemmed The importance of interpreting machine learning models for blood glucose prediction in diabetes: an analysis using SHAP
title_short The importance of interpreting machine learning models for blood glucose prediction in diabetes: an analysis using SHAP
title_sort importance of interpreting machine learning models for blood glucose prediction in diabetes: an analysis using shap
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10558434/
https://www.ncbi.nlm.nih.gov/pubmed/37803177
http://dx.doi.org/10.1038/s41598-023-44155-x
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