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Association between ankylosing spondylitis and m6A methylation

BACKGROUND: N6-methyl adenosine (m6A) is the most common reversible mRNA modification in eukaryotes implicated in key roles in various biological processes. The purpose of our analysis was to examine the association of ankylosing spondylitis (AS) with m6A methylation. METHOD: We obtained 72 samples...

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Autores principales: Luan, Zhiwei, Wang, Yansong
Formato: Online Artículo Texto
Lenguaje:English
Publicado: BioMed Central 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10559441/
https://www.ncbi.nlm.nih.gov/pubmed/37805597
http://dx.doi.org/10.1186/s13018-023-04254-x
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author Luan, Zhiwei
Wang, Yansong
author_facet Luan, Zhiwei
Wang, Yansong
author_sort Luan, Zhiwei
collection PubMed
description BACKGROUND: N6-methyl adenosine (m6A) is the most common reversible mRNA modification in eukaryotes implicated in key roles in various biological processes. The purpose of our analysis was to examine the association of ankylosing spondylitis (AS) with m6A methylation. METHOD: We obtained 72 samples from the data set GSE73754, including 52 AS patients and 20 healthy people. We divided the samples into two groups: the experimental group and the control group, and then observed the differences of 26 m6A related genes in the two groups. We also analyzed the correlation between different m6A genes. We used a random forest tree model to screen seven m6A signature genes associated with AS to evaluate its prevalence. Next, the samples were classified according to the m6a content and differential genes. Immune analysis, gene ontology, and KEGG enrichment analyses were performed. Finally, we scored each sample with m6a and analyzed the relationship between different samples and inflammation-related factors. RESULTS AND CONCLUSION: In conclusion, we screened out AS-related genes and the nomogram showed that they were negatively correlated with the incidence of AS. And we found that AS may have some relationship with immunity. Our analysis results could provide further insights into the treatment of AS.
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spelling pubmed-105594412023-10-08 Association between ankylosing spondylitis and m6A methylation Luan, Zhiwei Wang, Yansong J Orthop Surg Res Research Article BACKGROUND: N6-methyl adenosine (m6A) is the most common reversible mRNA modification in eukaryotes implicated in key roles in various biological processes. The purpose of our analysis was to examine the association of ankylosing spondylitis (AS) with m6A methylation. METHOD: We obtained 72 samples from the data set GSE73754, including 52 AS patients and 20 healthy people. We divided the samples into two groups: the experimental group and the control group, and then observed the differences of 26 m6A related genes in the two groups. We also analyzed the correlation between different m6A genes. We used a random forest tree model to screen seven m6A signature genes associated with AS to evaluate its prevalence. Next, the samples were classified according to the m6a content and differential genes. Immune analysis, gene ontology, and KEGG enrichment analyses were performed. Finally, we scored each sample with m6a and analyzed the relationship between different samples and inflammation-related factors. RESULTS AND CONCLUSION: In conclusion, we screened out AS-related genes and the nomogram showed that they were negatively correlated with the incidence of AS. And we found that AS may have some relationship with immunity. Our analysis results could provide further insights into the treatment of AS. BioMed Central 2023-10-07 /pmc/articles/PMC10559441/ /pubmed/37805597 http://dx.doi.org/10.1186/s13018-023-04254-x Text en © The Author(s) 2023 https://creativecommons.org/licenses/by/4.0/Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) . The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/ (https://creativecommons.org/publicdomain/zero/1.0/) ) applies to the data made available in this article, unless otherwise stated in a credit line to the data.
spellingShingle Research Article
Luan, Zhiwei
Wang, Yansong
Association between ankylosing spondylitis and m6A methylation
title Association between ankylosing spondylitis and m6A methylation
title_full Association between ankylosing spondylitis and m6A methylation
title_fullStr Association between ankylosing spondylitis and m6A methylation
title_full_unstemmed Association between ankylosing spondylitis and m6A methylation
title_short Association between ankylosing spondylitis and m6A methylation
title_sort association between ankylosing spondylitis and m6a methylation
topic Research Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10559441/
https://www.ncbi.nlm.nih.gov/pubmed/37805597
http://dx.doi.org/10.1186/s13018-023-04254-x
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