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Clinical significance and immune infiltration analyses of a novel coagulation-related signature in ovarian cancer
Ovarian cancer (OV) is the most lethal gynecological malignancies worldwide. The coagulation cascade could induce tumor cell infiltration and contribute to OV progression. However, coagulation-related gene (CRG) signature for OV prognosis hasn’t been determined yet. In this study, we evaluated the p...
Autores principales: | , , , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
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BioMed Central
2023
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10559580/ https://www.ncbi.nlm.nih.gov/pubmed/37803446 http://dx.doi.org/10.1186/s12935-023-03040-3 |
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author | Yang, Jiani Wang, Chao Zhang, Yue Cheng, Shanshan Wu, Meixuan Gu, Sijia Xu, Shilin Wu, Yongsong Sheng, Jindan Voon, Dominic Chih-Cheng Wang, Yu |
author_facet | Yang, Jiani Wang, Chao Zhang, Yue Cheng, Shanshan Wu, Meixuan Gu, Sijia Xu, Shilin Wu, Yongsong Sheng, Jindan Voon, Dominic Chih-Cheng Wang, Yu |
author_sort | Yang, Jiani |
collection | PubMed |
description | Ovarian cancer (OV) is the most lethal gynecological malignancies worldwide. The coagulation cascade could induce tumor cell infiltration and contribute to OV progression. However, coagulation-related gene (CRG) signature for OV prognosis hasn’t been determined yet. In this study, we evaluated the prognostic value of coagulation scores through receiver operating characteristics (ROC) analysis and K-M curves, among OV patients at our institution. Based on the transcriptome data of TCGA-OV cohort, we stratified two coagulation-related subtypes with distinct differences in prognosis and tumor immune microenvironment (p < 0.05). Moreover, from the 6406 differentially-expressed genes (DEGs) between the GTEx (n = 180) and TCGA-OV cohorts (n = 376), we identified 138 potential CRGs. Through LASSO-Cox algorithm, we finally distinguished a 3-gene signature (SERPINA10, CD38, and ZBTB16), with promising prognostic ability in both TCGA (p < 0.001) and ICGC cohorts (p = 0.040). Stepwise, we constructed a nomogram based on the clinical features and coagulation-related signature for overall survival prediction, with the C-index of 0.6761, which was evaluated by calibration curves. Especially, based on tissue microarrays analysis, Quantitative real-time fluorescence PCR (qRT-PCR), and Western Blot, we found that aberrant upregulation of CRGs was related to poor prognosis in OV at both mRNA and protein level (p < 0.05). Collectively, the coagulation-related signature was a robust prognostic biomarker, which could provide therapeutic benefits for chemotherapy/immunotherapy and assist clinical decision in OV patients. SUPPLEMENTARY INFORMATION: The online version contains supplementary material available at 10.1186/s12935-023-03040-3. |
format | Online Article Text |
id | pubmed-10559580 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2023 |
publisher | BioMed Central |
record_format | MEDLINE/PubMed |
spelling | pubmed-105595802023-10-08 Clinical significance and immune infiltration analyses of a novel coagulation-related signature in ovarian cancer Yang, Jiani Wang, Chao Zhang, Yue Cheng, Shanshan Wu, Meixuan Gu, Sijia Xu, Shilin Wu, Yongsong Sheng, Jindan Voon, Dominic Chih-Cheng Wang, Yu Cancer Cell Int Research Ovarian cancer (OV) is the most lethal gynecological malignancies worldwide. The coagulation cascade could induce tumor cell infiltration and contribute to OV progression. However, coagulation-related gene (CRG) signature for OV prognosis hasn’t been determined yet. In this study, we evaluated the prognostic value of coagulation scores through receiver operating characteristics (ROC) analysis and K-M curves, among OV patients at our institution. Based on the transcriptome data of TCGA-OV cohort, we stratified two coagulation-related subtypes with distinct differences in prognosis and tumor immune microenvironment (p < 0.05). Moreover, from the 6406 differentially-expressed genes (DEGs) between the GTEx (n = 180) and TCGA-OV cohorts (n = 376), we identified 138 potential CRGs. Through LASSO-Cox algorithm, we finally distinguished a 3-gene signature (SERPINA10, CD38, and ZBTB16), with promising prognostic ability in both TCGA (p < 0.001) and ICGC cohorts (p = 0.040). Stepwise, we constructed a nomogram based on the clinical features and coagulation-related signature for overall survival prediction, with the C-index of 0.6761, which was evaluated by calibration curves. Especially, based on tissue microarrays analysis, Quantitative real-time fluorescence PCR (qRT-PCR), and Western Blot, we found that aberrant upregulation of CRGs was related to poor prognosis in OV at both mRNA and protein level (p < 0.05). Collectively, the coagulation-related signature was a robust prognostic biomarker, which could provide therapeutic benefits for chemotherapy/immunotherapy and assist clinical decision in OV patients. SUPPLEMENTARY INFORMATION: The online version contains supplementary material available at 10.1186/s12935-023-03040-3. BioMed Central 2023-10-06 /pmc/articles/PMC10559580/ /pubmed/37803446 http://dx.doi.org/10.1186/s12935-023-03040-3 Text en © The Author(s) 2023 https://creativecommons.org/licenses/by/4.0/Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) . The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/ (https://creativecommons.org/publicdomain/zero/1.0/) ) applies to the data made available in this article, unless otherwise stated in a credit line to the data. |
spellingShingle | Research Yang, Jiani Wang, Chao Zhang, Yue Cheng, Shanshan Wu, Meixuan Gu, Sijia Xu, Shilin Wu, Yongsong Sheng, Jindan Voon, Dominic Chih-Cheng Wang, Yu Clinical significance and immune infiltration analyses of a novel coagulation-related signature in ovarian cancer |
title | Clinical significance and immune infiltration analyses of a novel coagulation-related signature in ovarian cancer |
title_full | Clinical significance and immune infiltration analyses of a novel coagulation-related signature in ovarian cancer |
title_fullStr | Clinical significance and immune infiltration analyses of a novel coagulation-related signature in ovarian cancer |
title_full_unstemmed | Clinical significance and immune infiltration analyses of a novel coagulation-related signature in ovarian cancer |
title_short | Clinical significance and immune infiltration analyses of a novel coagulation-related signature in ovarian cancer |
title_sort | clinical significance and immune infiltration analyses of a novel coagulation-related signature in ovarian cancer |
topic | Research |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10559580/ https://www.ncbi.nlm.nih.gov/pubmed/37803446 http://dx.doi.org/10.1186/s12935-023-03040-3 |
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