Cargando…
The use of mtCOI gene sequences in identifying Butis species in the Southwest of Vietnam
Butis genus is characterised by their small body size and morphological variability, allowing them to adapt to different habitats. This paper analyses the mitochondrial cytochrome C oxidase subunit I gene sequences and morphology of Butis for identification purposes and to understand genetic relatio...
Autores principales: | , , , , , |
---|---|
Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Elsevier
2023
|
Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10559908/ https://www.ncbi.nlm.nih.gov/pubmed/37809956 http://dx.doi.org/10.1016/j.heliyon.2023.e20139 |
_version_ | 1785117609501392896 |
---|---|
author | Lam, Tran Thi Huyen Dinh, Quang Minh Truong, Van Thi Bich Truong, Ngon Trong Tran, Nam Sy Nguyen, Ton Huu Duc |
author_facet | Lam, Tran Thi Huyen Dinh, Quang Minh Truong, Van Thi Bich Truong, Ngon Trong Tran, Nam Sy Nguyen, Ton Huu Duc |
author_sort | Lam, Tran Thi Huyen |
collection | PubMed |
description | Butis genus is characterised by their small body size and morphological variability, allowing them to adapt to different habitats. This paper analyses the mitochondrial cytochrome C oxidase subunit I gene sequences and morphology of Butis for identification purposes and to understand genetic relationships. The morphological characteristics of Butis koilomatodon differed obviously from Butis humeralis and Butis butis. After classification based on morphology, the total deoxyribonucleic acid of fish samples was isolated, and the mitochondrial cytochrome C oxidase subunit I genes were successfully amplified using the polymerase chain reaction method. At approximately 617bp, the obtained mitochondrial cytochrome C oxidase subunit I gene sequences were highly similar to the reference sequences on Genbank (85.90–100%). The phylogenetic graphic was divided into five distinct groups, where B. koilomatodon was grouped in one group; and B. humeralis and B. butis were grouped together. The results suggest that B. humeralis was an entirely different species from B. butis, with a mean genetic divergence of up to 14%. However, further studies using a combination of other types of deoxyribonucleic acid barcoding together with morphological features should be undertaken to confirm these findings. |
format | Online Article Text |
id | pubmed-10559908 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2023 |
publisher | Elsevier |
record_format | MEDLINE/PubMed |
spelling | pubmed-105599082023-10-08 The use of mtCOI gene sequences in identifying Butis species in the Southwest of Vietnam Lam, Tran Thi Huyen Dinh, Quang Minh Truong, Van Thi Bich Truong, Ngon Trong Tran, Nam Sy Nguyen, Ton Huu Duc Heliyon Research Article Butis genus is characterised by their small body size and morphological variability, allowing them to adapt to different habitats. This paper analyses the mitochondrial cytochrome C oxidase subunit I gene sequences and morphology of Butis for identification purposes and to understand genetic relationships. The morphological characteristics of Butis koilomatodon differed obviously from Butis humeralis and Butis butis. After classification based on morphology, the total deoxyribonucleic acid of fish samples was isolated, and the mitochondrial cytochrome C oxidase subunit I genes were successfully amplified using the polymerase chain reaction method. At approximately 617bp, the obtained mitochondrial cytochrome C oxidase subunit I gene sequences were highly similar to the reference sequences on Genbank (85.90–100%). The phylogenetic graphic was divided into five distinct groups, where B. koilomatodon was grouped in one group; and B. humeralis and B. butis were grouped together. The results suggest that B. humeralis was an entirely different species from B. butis, with a mean genetic divergence of up to 14%. However, further studies using a combination of other types of deoxyribonucleic acid barcoding together with morphological features should be undertaken to confirm these findings. Elsevier 2023-09-14 /pmc/articles/PMC10559908/ /pubmed/37809956 http://dx.doi.org/10.1016/j.heliyon.2023.e20139 Text en © 2023 The Authors https://creativecommons.org/licenses/by-nc-nd/4.0/This is an open access article under the CC BY-NC-ND license (http://creativecommons.org/licenses/by-nc-nd/4.0/). |
spellingShingle | Research Article Lam, Tran Thi Huyen Dinh, Quang Minh Truong, Van Thi Bich Truong, Ngon Trong Tran, Nam Sy Nguyen, Ton Huu Duc The use of mtCOI gene sequences in identifying Butis species in the Southwest of Vietnam |
title | The use of mtCOI gene sequences in identifying Butis species in the Southwest of Vietnam |
title_full | The use of mtCOI gene sequences in identifying Butis species in the Southwest of Vietnam |
title_fullStr | The use of mtCOI gene sequences in identifying Butis species in the Southwest of Vietnam |
title_full_unstemmed | The use of mtCOI gene sequences in identifying Butis species in the Southwest of Vietnam |
title_short | The use of mtCOI gene sequences in identifying Butis species in the Southwest of Vietnam |
title_sort | use of mtcoi gene sequences in identifying butis species in the southwest of vietnam |
topic | Research Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10559908/ https://www.ncbi.nlm.nih.gov/pubmed/37809956 http://dx.doi.org/10.1016/j.heliyon.2023.e20139 |
work_keys_str_mv | AT lamtranthihuyen theuseofmtcoigenesequencesinidentifyingbutisspeciesinthesouthwestofvietnam AT dinhquangminh theuseofmtcoigenesequencesinidentifyingbutisspeciesinthesouthwestofvietnam AT truongvanthibich theuseofmtcoigenesequencesinidentifyingbutisspeciesinthesouthwestofvietnam AT truongngontrong theuseofmtcoigenesequencesinidentifyingbutisspeciesinthesouthwestofvietnam AT trannamsy theuseofmtcoigenesequencesinidentifyingbutisspeciesinthesouthwestofvietnam AT nguyentonhuuduc theuseofmtcoigenesequencesinidentifyingbutisspeciesinthesouthwestofvietnam AT lamtranthihuyen useofmtcoigenesequencesinidentifyingbutisspeciesinthesouthwestofvietnam AT dinhquangminh useofmtcoigenesequencesinidentifyingbutisspeciesinthesouthwestofvietnam AT truongvanthibich useofmtcoigenesequencesinidentifyingbutisspeciesinthesouthwestofvietnam AT truongngontrong useofmtcoigenesequencesinidentifyingbutisspeciesinthesouthwestofvietnam AT trannamsy useofmtcoigenesequencesinidentifyingbutisspeciesinthesouthwestofvietnam AT nguyentonhuuduc useofmtcoigenesequencesinidentifyingbutisspeciesinthesouthwestofvietnam |