Cargando…

The use of mtCOI gene sequences in identifying Butis species in the Southwest of Vietnam

Butis genus is characterised by their small body size and morphological variability, allowing them to adapt to different habitats. This paper analyses the mitochondrial cytochrome C oxidase subunit I gene sequences and morphology of Butis for identification purposes and to understand genetic relatio...

Descripción completa

Detalles Bibliográficos
Autores principales: Lam, Tran Thi Huyen, Dinh, Quang Minh, Truong, Van Thi Bich, Truong, Ngon Trong, Tran, Nam Sy, Nguyen, Ton Huu Duc
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Elsevier 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10559908/
https://www.ncbi.nlm.nih.gov/pubmed/37809956
http://dx.doi.org/10.1016/j.heliyon.2023.e20139
_version_ 1785117609501392896
author Lam, Tran Thi Huyen
Dinh, Quang Minh
Truong, Van Thi Bich
Truong, Ngon Trong
Tran, Nam Sy
Nguyen, Ton Huu Duc
author_facet Lam, Tran Thi Huyen
Dinh, Quang Minh
Truong, Van Thi Bich
Truong, Ngon Trong
Tran, Nam Sy
Nguyen, Ton Huu Duc
author_sort Lam, Tran Thi Huyen
collection PubMed
description Butis genus is characterised by their small body size and morphological variability, allowing them to adapt to different habitats. This paper analyses the mitochondrial cytochrome C oxidase subunit I gene sequences and morphology of Butis for identification purposes and to understand genetic relationships. The morphological characteristics of Butis koilomatodon differed obviously from Butis humeralis and Butis butis. After classification based on morphology, the total deoxyribonucleic acid of fish samples was isolated, and the mitochondrial cytochrome C oxidase subunit I genes were successfully amplified using the polymerase chain reaction method. At approximately 617bp, the obtained mitochondrial cytochrome C oxidase subunit I gene sequences were highly similar to the reference sequences on Genbank (85.90–100%). The phylogenetic graphic was divided into five distinct groups, where B. koilomatodon was grouped in one group; and B. humeralis and B. butis were grouped together. The results suggest that B. humeralis was an entirely different species from B. butis, with a mean genetic divergence of up to 14%. However, further studies using a combination of other types of deoxyribonucleic acid barcoding together with morphological features should be undertaken to confirm these findings.
format Online
Article
Text
id pubmed-10559908
institution National Center for Biotechnology Information
language English
publishDate 2023
publisher Elsevier
record_format MEDLINE/PubMed
spelling pubmed-105599082023-10-08 The use of mtCOI gene sequences in identifying Butis species in the Southwest of Vietnam Lam, Tran Thi Huyen Dinh, Quang Minh Truong, Van Thi Bich Truong, Ngon Trong Tran, Nam Sy Nguyen, Ton Huu Duc Heliyon Research Article Butis genus is characterised by their small body size and morphological variability, allowing them to adapt to different habitats. This paper analyses the mitochondrial cytochrome C oxidase subunit I gene sequences and morphology of Butis for identification purposes and to understand genetic relationships. The morphological characteristics of Butis koilomatodon differed obviously from Butis humeralis and Butis butis. After classification based on morphology, the total deoxyribonucleic acid of fish samples was isolated, and the mitochondrial cytochrome C oxidase subunit I genes were successfully amplified using the polymerase chain reaction method. At approximately 617bp, the obtained mitochondrial cytochrome C oxidase subunit I gene sequences were highly similar to the reference sequences on Genbank (85.90–100%). The phylogenetic graphic was divided into five distinct groups, where B. koilomatodon was grouped in one group; and B. humeralis and B. butis were grouped together. The results suggest that B. humeralis was an entirely different species from B. butis, with a mean genetic divergence of up to 14%. However, further studies using a combination of other types of deoxyribonucleic acid barcoding together with morphological features should be undertaken to confirm these findings. Elsevier 2023-09-14 /pmc/articles/PMC10559908/ /pubmed/37809956 http://dx.doi.org/10.1016/j.heliyon.2023.e20139 Text en © 2023 The Authors https://creativecommons.org/licenses/by-nc-nd/4.0/This is an open access article under the CC BY-NC-ND license (http://creativecommons.org/licenses/by-nc-nd/4.0/).
spellingShingle Research Article
Lam, Tran Thi Huyen
Dinh, Quang Minh
Truong, Van Thi Bich
Truong, Ngon Trong
Tran, Nam Sy
Nguyen, Ton Huu Duc
The use of mtCOI gene sequences in identifying Butis species in the Southwest of Vietnam
title The use of mtCOI gene sequences in identifying Butis species in the Southwest of Vietnam
title_full The use of mtCOI gene sequences in identifying Butis species in the Southwest of Vietnam
title_fullStr The use of mtCOI gene sequences in identifying Butis species in the Southwest of Vietnam
title_full_unstemmed The use of mtCOI gene sequences in identifying Butis species in the Southwest of Vietnam
title_short The use of mtCOI gene sequences in identifying Butis species in the Southwest of Vietnam
title_sort use of mtcoi gene sequences in identifying butis species in the southwest of vietnam
topic Research Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10559908/
https://www.ncbi.nlm.nih.gov/pubmed/37809956
http://dx.doi.org/10.1016/j.heliyon.2023.e20139
work_keys_str_mv AT lamtranthihuyen theuseofmtcoigenesequencesinidentifyingbutisspeciesinthesouthwestofvietnam
AT dinhquangminh theuseofmtcoigenesequencesinidentifyingbutisspeciesinthesouthwestofvietnam
AT truongvanthibich theuseofmtcoigenesequencesinidentifyingbutisspeciesinthesouthwestofvietnam
AT truongngontrong theuseofmtcoigenesequencesinidentifyingbutisspeciesinthesouthwestofvietnam
AT trannamsy theuseofmtcoigenesequencesinidentifyingbutisspeciesinthesouthwestofvietnam
AT nguyentonhuuduc theuseofmtcoigenesequencesinidentifyingbutisspeciesinthesouthwestofvietnam
AT lamtranthihuyen useofmtcoigenesequencesinidentifyingbutisspeciesinthesouthwestofvietnam
AT dinhquangminh useofmtcoigenesequencesinidentifyingbutisspeciesinthesouthwestofvietnam
AT truongvanthibich useofmtcoigenesequencesinidentifyingbutisspeciesinthesouthwestofvietnam
AT truongngontrong useofmtcoigenesequencesinidentifyingbutisspeciesinthesouthwestofvietnam
AT trannamsy useofmtcoigenesequencesinidentifyingbutisspeciesinthesouthwestofvietnam
AT nguyentonhuuduc useofmtcoigenesequencesinidentifyingbutisspeciesinthesouthwestofvietnam